Processive binding mechanism of Cel9G from Clostridium cellulovorans: molecular dynamics and free energy landscape investigations

CalkGH9T: A Glycoside Hydrolase Family 9 Enzyme from Clostridium alkalicellulosi

(2021) Paripok Phitsuwan et al.   Catalysts

Changes in supramolecular structure and improvement in reactivity of dissolving pulp via enzymatic pretreatment with processive endoglucanase EG1 from Volvaria volvacea

(2020) Shanshan Wu et al.   JOURNAL OF WOOD CHEMISTRY AND TECHNOLOGY

Discovery of processive catalysis by an exo-hydrolase with a pocket-shaped active site

(2019) Victor A. Streltsov et al.   Nature Communications

Processivity and the Mechanisms of Processive Endoglucanases

(2019) Shanshan Wu et al.   APPLIED BIOCHEMISTRY AND BIOTECHNOLOGY

Role of carbohydrate binding module (CBM3c) of GH9 β-1,4 endoglucanase (Cel9W) from Hungateiclostridium thermocellum ATCC 27405 in catalysis

(2019) Krishan Kumar et al.   CARBOHYDRATE RESEARCH

The dissociation mechanism of processive cellulases

(2019) Josh V. Vermaas et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A processive endoglucanase with multi-substrate specificity is characterized from porcine gut microbiota

(2019) Weijun Wang et al.   Scientific Reports

Processivity in Bacterial Glycosyltransferases

(2019) Liubov Yakovlieva et al.   ACS Chemical Biology

Processive Degradation of Crystalline Cellulose by a Multimodular Endoglucanase via a Wirewalking Mode

(2018) Kun-Di Zhang et al.   BIOMACROMOLECULES

Processivity and enzymatic mechanism of a multifunctional family 5 endoglucanase from Bacillus subtilis BS-5 with potential applications in the saccharification of cellulosic substrates

(2018) Bin Wu et al.   Biotechnology for Biofuels

Molecular dynamics investigations of cello-oligosaccharide recognition by Cel9G–CBM3c from Clostridium cellulovorans

(2018) Penghui Li et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Altering the linker in processive GH5 endoglucanase 1 modulates lignin binding and catalytic properties

(2018) Zhen Wang et al.   Biotechnology for Biofuels

Influence of Linker Length Variations on the Biomass-Degrading Performance of Heat-Active Enzyme Chimeras

(2016) Mazen Rizk et al.   MOLECULAR BIOTECHNOLOGY

Linker length and flexibility induces new cellobiohydrolase activity of PoCel6A fromPenicillium oxalicum

(2015) Le Gao et al.   Biotechnology Journal

Fungal Cellulases

(2015) Christina M. Payne et al.   CHEMICAL REVIEWS

Computational Studies of Glycoside, Carboxylic Ester, and Thioester Hydrolase Mechanisms: A Review

(2015) Peter J. Reilly et al.   INDUSTRIAL & ENGINEERING CHEMISTRY RESEARCH

ff14SB: Improving the Accuracy of Protein Side Chain and Backbone Parameters from ff99SB

(2015) James A. Maier et al.   Journal of Chemical Theory and Computation

Linker length and flexibility induces new cellobiohydrolase activity of PoCel6A fromPenicillium oxalicum

(2015) Le Gao et al.   Biotechnology Journal

Reassembly and co-crystallization of a family 9 processive endoglucanase from its component parts: structural and functional significance of the intermodular linker

(2015) Svetlana Petkun et al.   PeerJ

Towards a molecular-level theory of carbohydrate processivity in glycoside hydrolases

(2014) Gregg T Beckham et al.   CURRENT OPINION IN BIOTECHNOLOGY

Enzyme processivity changes with the extent of recalcitrant polysaccharide degradation

(2014) Anne Grethe Hamre et al.   FEBS LETTERS

Carbohydrate–Protein Interactions That Drive Processive Polysaccharide Translocation in Enzymes Revealed from a Computational Study of Cellobiohydrolase Processivity

(2014) Brandon C. Knott et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Trade-off between Processivity and Hydrolytic Velocity of Cellobiohydrolases at the Surface of Crystalline Cellulose

(2014) Akihiko Nakamura et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

PLUMED 2: New feathers for an old bird

(2013) Gareth A. Tribello et al.   COMPUTER PHYSICS COMMUNICATIONS

Routine Microsecond Molecular Dynamics Simulations with AMBER on GPUs. 2. Explicit Solvent Particle Mesh Ewald

(2013) Romelia Salomon-Ferrer et al.   Journal of Chemical Theory and Computation

Glycoside Hydrolase Processivity Is Directly Related to Oligosaccharide Binding Free Energy

(2013) Christina M. Payne et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Crystal structures of Escherichia coli exonuclease I in complex with single-stranded DNA provide insights into the mechanism of processive digestion

(2013) Sai Krishna C. Korada et al.   NUCLEIC ACIDS RESEARCH

Carbohydrate–Aromatic Interactions

(2012) Juan Luis Asensio et al.   ACCOUNTS OF CHEMICAL RESEARCH

Structure of the catalytic domain of theClostridium thermocellumcellulase CelT

(2012) Muppuru M. Kesavulu et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Hallmarks of Processivity in Glycoside Hydrolases from Crystallographic and Computational Studies of theSerratia marcescensChitinases

(2012) Christina M. Payne et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Cellulase Linkers Are Optimized Based on Domain Type and Function: Insights from Sequence Analysis, Biophysical Measurements, and Molecular Simulation

(2012) Deanne W. Sammond et al.   PLoS One

Linkers in the structural biology of protein-protein interactions

(2012) Vishnu Priyanka Reddy Chichili et al.   PROTEIN SCIENCE

Traffic Jams Reduce Hydrolytic Efficiency of Cellulase on Cellulose Surface

(2011) K. Igarashi et al.   SCIENCE

Working Mechanism for a Redox Switchable Molecular Machine Based on Cyclodextrin: A Free Energy Profile Approach

(2010) Qiong Zhang et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Engineering a family 9 processive endoglucanase from Paenibacillus barcinonensis displaying a novel architecture

(2009) Alina Iulia Chiriac et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Rapid E2-E3 Assembly and Disassembly Enable Processive Ubiquitylation of Cullin-RING Ubiquitin Ligase Substrates

(2009) Gary Kleiger et al.   CELL

Physical association of the catalytic and helper modules of a family-9 glycoside hydrolase is essential for activity

(2009) Tal Burstein et al.   FEBS LETTERS

Processive Endoglucanases Mediate Degradation of Cellulose by Saccharophagus degradans

(2009) B. J. Watson et al.   JOURNAL OF BACTERIOLOGY

Bad Seeds Sprout Perilous Dynamics: Stochastic Thermostat Induced Trajectory Synchronization in Biomolecules

(2009) Daniel J. Sindhikara et al.   Journal of Chemical Theory and Computation

Multimodal Activation of the Ubiquitin Ligase SCF by Nedd8 Conjugation

(2008) Anjanabha Saha et al.   MOLECULAR CELL

Well-Tempered Metadynamics: A Smoothly Converging and Tunable Free-Energy Method

(2008) Alessandro Barducci et al.   PHYSICAL REVIEW LETTERS