Analyses of Marsilea vestita genome and transcriptomes do not support widespread intron retention during spermatogenesis

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RiboPlotR: a visualization tool for periodic Ribo-seq reads

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TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

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TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads

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Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

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Hybrid assembly of the large and highly repetitive genome ofAegilops tauschii, a progenitor of bread wheat, with the MaSuRCA mega-reads algorithm

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De novo assembly of the Aedes aegypti genome using Hi-C yields chromosome-length scaffolds

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Juicer Provides a One-Click System for Analyzing Loop-Resolution Hi-C Experiments

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BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

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Detained introns are a novel, widespread class of post-transcriptionally spliced introns

(2015) Paul L. Boutz et al.   GENES & DEVELOPMENT

Removal of Retained Introns Regulates Translation in the Rapidly Developing Gametophyte of Marsilea vestita

(2013) Thomas C. Boothby et al.   DEVELOPMENTAL CELL

MAKER2: an annotation pipeline and genome-database management tool for second-generation genome projects

(2011) Carson Holt et al.   BMC BIOINFORMATICS

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

Extremes in rapid cellular morphogenesis: post-transcriptional regulation of spermatogenesis in Marsilea vestita

(2011) Stephen M. Wolniak et al.   PROTOPLASMA

Differential expression analysis for sequence count data

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