On the use of high-throughput sequencing for the study of cyanobacterial diversity in Antarctic aquatic mats

Supratidal Extremophiles—Cyanobacterial Diversity in the Rock Pools of the Croatian Adria

(2015) Maria Brandes et al.   MICROBIAL ECOLOGY

Ecology and exploration of the rare biosphere

(2015) Michael D. J. Lynch et al.   NATURE REVIEWS MICROBIOLOGY

Diversity of toxin and non-toxin containing cyanobacterial mats of meltwater ponds on the Antarctic Peninsula: a pyrosequencing approach

(2014) J. Kleinteich et al.   ANTARCTIC SCIENCE

The spatial structure of Antarctic biodiversity

(2014) Peter Convey et al.   ECOLOGICAL MONOGRAPHS

High-throughput sequencing shows inconsistent results with a microscope-based analysis of the soil prokaryotic community

(2014) Masayuki Ushio et al.   SOIL BIOLOGY & BIOCHEMISTRY

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

(2013) Migun Shakya et al.   ENVIRONMENTAL MICROBIOLOGY

Cyanobacterial diversity in the hot spring, pelagic and benthic habitats of a tropical soda lake

(2013) Pawan K. Dadheech et al.   FEMS MICROBIOLOGY ECOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Ribosomal Database Project: data and tools for high throughput rRNA analysis

(2013) James R. Cole et al.   NUCLEIC ACIDS RESEARCH

Assessing the Consequences of Denoising Marker-Based Metagenomic Data

(2013) John M. Gaspar et al.   PLoS One

Temporal shifts in cyanobacterial communities at different sites on the Nakdong River in Korea

(2013) Moonsuk Hur et al.   WATER RESEARCH

Effects of PCR cycle number and DNA polymerase type on the 16S rRNA gene pyrosequencing analysis of bacterial communities

(2012) Jae-Hyung Ahn et al.   JOURNAL OF MICROBIOLOGY

Polyphasic characterization of benthic cyanobacterial diversity from biofilms of the Guadarrama river (Spain): morphological, molecular, and ecological approaches1

(2012) Virginia Loza et al.   JOURNAL OF PHYCOLOGY

Next-generation sequencing technologies for environmental DNA research

(2012) SHADI SHOKRALLA et al.   MOLECULAR ECOLOGY

Implications of Pyrosequencing Error Correction for Biological Data Interpretation

(2012) Matthew G. Bakker et al.   PLoS One

PCR Biases Distort Bacterial and Archaeal Community Structure in Pyrosequencing Datasets

(2012) Ameet J. Pinto et al.   PLoS One

Groundtruthing Next-Gen Sequencing for Microbial Ecology–Biases and Errors in Community Structure Estimates from PCR Amplicon Pyrosequencing

(2012) Charles K. Lee et al.   PLoS One

CREST – Classification Resources for Environmental Sequence Tags

(2012) Anders Lanzén et al.   PLoS One

Barcoded Primers Used in Multiplex Amplicon Pyrosequencing Bias Amplification

(2011) David Berry et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Low cyanobacterial diversity in biotopes of the Transantarctic Mountains and Shackleton Range (80-82°S), Antarctica

(2011) Rafael Fernandez-Carazo et al.   FEMS MICROBIOLOGY ECOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

An improved Greengenes taxonomy with explicit ranks for ecological and evolutionary analyses of bacteria and archaea

(2011) Daniel McDonald et al.   ISME Journal

Reducing the Effects of PCR Amplification and Sequencing Artifacts on 16S rRNA-Based Studies

(2011) Patrick D. Schloss et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Quantifying microbial communities with 454 pyrosequencing: does read abundance count?

(2010) ANTHONY S. AMEND et al.   MOLECULAR ECOLOGY

Bacterial diversity in dry modern freshwater stromatolites from Ruidera Pools Natural Park, Spain

(2010) Fernando Santos et al.   SYSTEMATIC AND APPLIED MICROBIOLOGY

The limnology and biology of the Dufek Massif, Transantarctic Mountains 82° South

(2010) Dominic A. Hodgson et al.   Polar Science

Introducing mothur: Open-Source, Platform-Independent, Community-Supported Software for Describing and Comparing Microbial Communities

(2009) P. D. Schloss et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Wrinkles in the rare biosphere: pyrosequencing errors can lead to artificial inflation of diversity estimates

(2009) Victor Kunin et al.   ENVIRONMENTAL MICROBIOLOGY

Microorganisms in the atmosphere over Antarctica

(2009) David A. Pearce et al.   FEMS MICROBIOLOGY ECOLOGY

Polymerase chain reaction primers miss half of rRNA microbial diversity

(2009) SunHee Hong et al.   ISME Journal

Global distribution of cyanobacterial ecotypes in the cold biosphere

(2009) Anne D Jungblut et al.   ISME Journal

Accurate determination of microbial diversity from 454 pyrosequencing data

(2009) Christopher Quince et al.   NATURE METHODS

A renaissance for the pioneering 16S rRNA gene

(2008) Susannah G Tringe et al.   CURRENT OPINION IN MICROBIOLOGY

Diversity of the cyanobacterial microflora of the northern part of James Ross Island, NW Weddell Sea, Antarctica

(2008) Jiří Komárek et al.   POLAR BIOLOGY