Deep-sea sediment metagenome from Bay of Bengal reveals distinct microbial diversity and functional significance

Diversity of cultivable bacteria from deep-sea sediments of the Colombian Caribbean and their potential in bioremediation

(2022) Lina Marcela Blandón et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Nanopore sequencing and its application to the study of microbial communities

(2021) Laura Ciuffreda et al.   Computational and Structural Biotechnology Journal

Bacterial diversity in deep-sea sediments under influence of asphalt seep at the São Paulo Plateau

(2020) Luciano Lopes Queiroz et al.   ANTONIE VAN LEEUWENHOEK INTERNATIONAL JOURNAL OF GENERAL AND MOLECULAR MICROBIOLOGY

Diversity of Bacterial Community in the Oxygen Minimum Zones of Arabian Sea and Bay of Bengal as Deduced by Illumina Sequencing

(2020) Genevieve L. Fernandes et al.   Frontiers in Microbiology

Ecogenomics and metabolic potential of the South Atlantic Ocean microbiome

(2020) F.H. Coutinho et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Occurrence and distribution of antibiotic resistance genes in the sediments of the East China Sea bays

(2019) Jiayu Chen et al.   JOURNAL OF ENVIRONMENTAL SCIENCES

Baseline characterization of aerobic hydrocarbon degrading microbial communities in deep‐sea sediments of the Great Australian Bight, Australia

(2019) Jodie Kamp et al.   ENVIRONMENTAL MICROBIOLOGY

The Majority of Active Rhodobacteraceae in Marine Sediments Belong to Uncultured Genera: A Molecular Approach to Link Their Distribution to Environmental Conditions

(2019) Marion Pohlner et al.   Frontiers in Microbiology

Microbial Diversity and Connectivity in Deep-Sea Sediments of the South Atlantic Polar Front

(2019) Gilda Varliero et al.   Frontiers in Microbiology

Metagenomic characterization of antibiotic resistance genes in Antarctic soils

(2019) Ke Yuan et al.   ECOTOXICOLOGY AND ENVIRONMENTAL SAFETY

NanoARG: a web service for detecting and contextualizing antimicrobial resistance genes from nanopore-derived metagenomes

(2019) G. A. Arango-Argoty et al.   Microbiome

Amplicon sequencing and imputed metagenomic analysis of waste soil and sediment microbiome reveals unique bacterial communities and their functional attributes

(2019) Surajit De Mandal et al.   ENVIRONMENTAL MONITORING AND ASSESSMENT

Antibiotic Resistome Biomarkers associated to the Pelagic Sediments of the Gulfs of Kathiawar Peninsula and Arabian Sea

(2019) Chandrashekar Mootapally et al.   Scientific Reports

Microbial Composition and Variability of Natural Marine Planktonic and Biofouling Communities From the Bay of Bengal

(2019) Angelina G. Angelova et al.   Frontiers in Microbiology

Metagenomes from deep Baltic Sea sediments reveal how past and present environmental conditions determine microbial community composition

(2018) Ian P.G. Marshall et al.   Marine Genomics

Microbial Diversity in Sediments from the Bottom of the Challenger Deep, the Mariana Trench

(2018) Takuro Nunoura et al.   MICROBES AND ENVIRONMENTS

Metagenomic Signatures of Microbial Communities in Deep-Sea Hydrothermal Sediments of Azores Vent Fields

(2018) Teresa Cerqueira et al.   MICROBIAL ECOLOGY

Nanopore sequencing and assembly of a human genome with ultra-long reads

(2018) Miten Jain et al.   NATURE BIOTECHNOLOGY

Arctic antibiotic resistance gene contamination, a result of anthropogenic activities and natural origin

(2018) Lu Tan et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Diversity of Gene Clusters for Polyketide and Nonribosomal Peptide Biosynthesis Revealed by Metagenomic Analysis of the Yellow Sea Sediment

(2018) Yongjun Wei et al.   Frontiers in Microbiology

Polyphasic approach revealed complex bacterial community structure and function in deep sea sediment of ultra-slow spreading Southwest Indian Ridge

(2018) Rupesh Kumar Sinha et al.   ECOLOGICAL INDICATORS

Metagenomics Reveals Microbial Diversity and Metabolic Potentials of Seawater and Surface Sediment From a Hadal Biosphere at the Yap Trench

(2018) Xinxu Zhang et al.   Frontiers in Microbiology

Plastics in the marine environment are reservoirs for antibiotic and metal resistance genes

(2018) Yuyi Yang et al.   ENVIRONMENT INTERNATIONAL

Canu: scalable and accurate long-read assembly via adaptivek-mer weighting and repeat separation

(2017) Sergey Koren et al.   GENOME RESEARCH

Complex bacterial communities in the deep-sea sediments of the Bay of Bengal and volcanic Barren Island in the Andaman Sea

(2017) Pankaj Verma et al.   Marine Genomics

Microbial community analysis of the hypersaline water of the Dead Sea using high-throughput amplicon sequencing

(2017) Jacob H. Jacob et al.   MicrobiologyOpen

Genomic insights into potential interdependencies in microbial hydrocarbon and nutrient cycling in hydrothermal sediments

(2017) Nina Dombrowski et al.   Microbiome

Comparative metagenomics of hydrocarbon and methane seeps of the Gulf of Mexico

(2017) Adrien Vigneron et al.   Scientific Reports

Metagenomic 16s rRNA investigation of microbial communities in the Black Sea estuaries in South-West of Ukraine

(2016) Oleksandra Bobrova et al.   ACTA BIOCHIMICA POLONICA

Polymetallic nodules, sediments, and deep waters in the equatorial North Pacific exhibit highly diverse and distinct bacterial, archaeal, and microeukaryotic communities

(2016) Christine N. Shulse et al.   MicrobiologyOpen

Co-occurrence of resistance genes to antibiotics, biocides and metals reveals novel insights into their co-selection potential

(2015) Chandan Pal et al.   BMC GENOMICS

Metagenomic Assembly Reveals Hosts of Antibiotic Resistance Genes and the Shared Resistome in Pig, Chicken, and Human Feces

(2015) Liping Ma et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Genomic Reconstruction of an Uncultured Hydrothermal Vent Gammaproteobacterial Methanotroph (Family Methylothermaceae) Indicates Multiple Adaptations to Oxygen Limitation

(2015) Connor T. Skennerton et al.   Frontiers in Microbiology

Genomic resolution of linkages in carbon, nitrogen, and sulfur cycling among widespread estuary sediment bacteria

(2015) Brett J Baker et al.   Microbiome

Recent advances in deep-sea natural products

(2014) Danielle Skropeta et al.   NATURAL PRODUCT REPORTS

Fast and sensitive protein alignment using DIAMOND

(2014) Benjamin Buchfink et al.   NATURE METHODS

The microbial nitrogen cycling potential is impacted by polyaromatic hydrocarbon pollution of marine sediments

(2014) Nicole M. Scott et al.   Frontiers in Microbiology

Metagenomic Profiles of Antibiotic Resistance Genes (ARGs) between Human Impacted Estuary and Deep Ocean Sediments

(2013) Baowei Chen et al.   ENVIRONMENTAL SCIENCE & TECHNOLOGY

Ecology of marine Bacteroidetes: a comparative genomics approach

(2013) Beatriz Fernández-Gómez et al.   ISME Journal

Low Temperature Geomicrobiology Follows Host Rock Composition Along a Geochemical Gradient in Lau Basin

(2013) Jason B. Sylvan et al.   Frontiers in Microbiology

Ocean currents shape the microbiome of Arctic marine sediments

(2012) Leila J Hamdan et al.   ISME Journal

Antibiotic Resistance Is Prevalent in an Isolated Cave Microbiome

(2012) Kirandeep Bhullar et al.   PLoS One

RAPSearch2: a fast and memory-efficient protein similarity search tool for next-generation sequencing data

(2011) Y. Zhao et al.   BIOINFORMATICS

Field and laboratory studies on the bioconversion of coal to methane in the San Juan Basin

(2011) Boris Wawrik et al.   FEMS MICROBIOLOGY ECOLOGY

Antibiotic resistance is ancient

(2011) Vanessa M. D’Costa et al.   NATURE

HMMER web server: interactive sequence similarity searching

(2011) R. D. Finn et al.   NUCLEIC ACIDS RESEARCH

Sulfur Metabolisms in Epsilon- and Gamma-Proteobacteria in Deep-Sea Hydrothermal Fields

(2011) Masahiro Yamamoto et al.   Frontiers in Microbiology

Impact of natural oil and higher hydrocarbons on microbial diversity, distribution, and activity in Gulf of Mexico cold-seep sediments

(2010) Beth N. Orcutt et al.   DEEP-SEA RESEARCH PART II-TOPICAL STUDIES IN OCEANOGRAPHY

Water mass-specificity of bacterial communities in the North Atlantic revealed by massively parallel sequencing

(2010) HÉLÈNE AGOGUÉ et al.   MOLECULAR ECOLOGY

Ab initio gene identification in metagenomic sequences

(2010) Wenhan Zhu et al.   NUCLEIC ACIDS RESEARCH

Bacterial diversity and biogeography in deep-sea surface sediments of the South Atlantic Ocean

(2009) Regina Schauer et al.   ISME Journal

Prokaryotic biodiversity and activity in the deep subseafloor biosphere

(2008) John C. Fry et al.   FEMS MICROBIOLOGY ECOLOGY