A highly contiguous genome assembly of red perilla (Perilla frutescens) domesticated in Japan

Perilla frutescens: A Rich Source of Pharmacological Active Compounds

(2022) Tianyu Hou et al.   MOLECULES

Haplotype-resolved assembly of diploid genomes without parental data

(2022) Haoyu Cheng et al.   NATURE BIOTECHNOLOGY

Letter to the Editor: The World’s First CRISPR Tomato Launched to a Japanese Market: The Social-Economic Impact of its Implementation on Crop Genome Editing

(2022) Hiroshi Ezura   PLANT AND CELL PHYSIOLOGY

Systematic Functional Annotation Workflow for Insects

(2022) Hidemasa Bono et al.   Insects

Haplotype-resolved de novo assembly using phased assembly graphs with hifiasm

(2021) Haoyu Cheng et al.   NATURE METHODS

Perilla Seed Oil Enhances Cognitive Function and Mental Health in Healthy Elderly Japanese Individuals by Enhancing the Biological Antioxidant Potential

(2021) Michio Hashimoto et al.   Foods

BUSCO Update: Novel and Streamlined Workflows along with Broader and Deeper Phylogenetic Coverage for Scoring of Eukaryotic, Prokaryotic, and Viral Genomes

(2021) Mosè Manni et al.   MOLECULAR BIOLOGY AND EVOLUTION

Incipient diploidization of the medicinal plant Perilla within 10,000 years

(2021) Yujun Zhang et al.   Nature Communications

Chromosome-scale assembly and evolution of the tetraploid Salvia splendens (Lamiaceae) genome

(2021) Kai-Hua Jia et al.   Horticulture Research

Effects of Nocturnal UV-B Irradiation on Growth, Flowering, and Phytochemical Concentration in Leaves of Greenhouse-Grown Red Perilla

(2021) Hideo Yoshida et al.   Plants-Basel

De novo chromosome level assembly of a plant genome from long read sequence data

(2021) Priyanka Sharma et al.   PLANT JOURNAL

Plant genome editing and the relevance of off-target changes

(2020) Nathaniel Graham et al.   PLANT PHYSIOLOGY

Long-read human genome sequencing and its applications

(2020) Glennis A. Logsdon et al.   NATURE REVIEWS GENETICS

CRISPR-derived genome editing technologies for metabolic engineering

(2020) Keiji Nishida et al.   METABOLIC ENGINEERING

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

Integrating Hi-C links with assembly graphs for chromosome-scale assembly

(2019) Jay Ghurye et al.   PLoS Computational Biology

Rosmarinic acid in Perilla frutescens and perilla herb analyzed by HPLC

(2019) Yuya Deguchi et al.   Journal of Natural Medicines

Versatile genome assembly evaluation with QUAST-LG

(2018) Alla Mikheenko et al.   BIOINFORMATICS

Minimap2: pairwise alignment for nucleotide sequences

(2018) Heng Li   BIOINFORMATICS

OUP accepted manuscript

(2018)   BIOINFORMATICS

Intestinal Anti-Inflammatory Activity of Perillaldehyde

(2018) Takuya Uemura et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

MUMmer4: A fast and versatile genome alignment system

(2018) Guillaume Marçais et al.   PLoS Computational Biology

Ethnomedicinal, Phytochemical and Pharmacological Investigations of Perilla frutescens (L.) Britt.

(2018) Hiwa Ahmed   MOLECULES

Molecular cloning and characterization of a Perilla frutescens cytochrome P450 enzyme that catalyzes the later steps of perillaldehyde biosynthesis

(2017) Yumi Fujiwara et al.   PHYTOCHEMISTRY

Efficient increase of ɣ-aminobutyric acid (GABA) content in tomato fruits by targeted mutagenesis

(2017) Satoko Nonaka et al.   Scientific Reports

Perillaldehyde, a Promising Antifungal Agent Used in Food Preservation, Triggers Apoptosis through a Metacaspase-Dependent Pathway in Aspergillus flavus

(2016) Jun Tian et al.   JOURNAL OF AGRICULTURAL AND FOOD CHEMISTRY

Juicebox Provides a Visualization System for Hi-C Contact Maps with Unlimited Zoom

(2016) Neva C. Durand et al.   Cell Systems

SeqKit: A Cross-Platform and Ultrafast Toolkit for FASTA/Q File Manipulation

(2016) Wei Shen et al.   PLoS One

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Sterol Side Chain Reductase 2 Is a Key Enzyme in the Biosynthesis of Cholesterol, the Common Precursor of Toxic Steroidal Glycoalkaloids in Potato

(2014) S. Sawai et al.   PLANT CELL

GenomeTools: A Comprehensive Software Library for Efficient Processing of Structured Genome Annotations

(2013) Gordon Gremme et al.   IEEE-ACM Transactions on Computational Biology and Bioinformatics

Effects of perillaldehyde on alternations in serum cytokines and depressive-like behavior in mice after lipopolysaccharide administration

(2013) Wei-Wei Ji et al.   PHARMACOLOGY BIOCHEMISTRY AND BEHAVIOR

Comparison of seed characteristics between the cultivated and the weedy types of Perilla species

(2012) Kyu Jin Sa et al.   Horticulture Environment and Biotechnology

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS