Comprehensive maturity of nuclear pore complexes regulates zygotic genome activation

Comprehensive structure and functional adaptations of the yeast nuclear pore complex

(2022) Christopher W. Akey et al.   CELL

The landscape of pioneer factor activity reveals the mechanisms of chromatin reprogramming and genome activation

(2022) Liyun Miao et al.   MOLECULAR CELL

Maternal Factors and Nodal Autoregulation Orchestrate Nodal Gene Expression for Embryonic Mesendoderm Induction in the Zebrafish

(2022) Cencan Xing et al.   Frontiers in Cell and Developmental Biology

TGFβ family signaling and development

(2021) Shunji Jia et al.   DEVELOPMENT

The cellular environment shapes the nuclear pore complex architecture

(2021) Anthony P. Schuller et al.   NATURE

Nuclear pores dilate and constrict in cellulo

(2021) Christian E. Zimmerli et al.   SCIENCE

Chromatin accessibility established by Pou5f3, Sox19b and Nanog primes genes for activity during zebrafish genome activation

(2020) Máté Pálfy et al.   PLoS Genetics

Nanog safeguards early embryogenesis against global activation of maternal β-catenin activity by interfering with TCF factors

(2020) Mudan He et al.   PLOS BIOLOGY

Pou5f3, SoxB1, and Nanog remodel chromatin on high nucleosome affinity regions at zygotic genome activation

(2019) Marina Veil et al.   GENOME RESEARCH

Brd4 and P300 Confer Transcriptional Competency during Zygotic Genome Activation

(2019) Shun Hang Chan et al.   DEVELOPMENTAL CELL

Migrasomes provide regional cues for organ morphogenesis during zebrafish gastrulation

(2019) Dong Jiang et al.   NATURE CELL BIOLOGY

Core Components of the Nuclear Pore Bind Distinct States of Chromatin and Contribute to Polycomb Repression

(2019) Alejandro Gozalo et al.   MOLECULAR CELL

AnimalTFDB 3.0: a comprehensive resource for annotation and prediction of animal transcription factors

(2018) Hui Hu et al.   NUCLEIC ACIDS RESEARCH

Mechanisms regulating zygotic genome activation

(2018) Katharine N. Schulz et al.   NATURE REVIEWS GENETICS

Maternal Huluwa dictates the embryonic body axis through β-catenin in vertebrates

(2018) Lu Yan et al.   SCIENCE

Mechanisms of nuclear pore complex assembly - two different ways of building one molecular machine

(2017) Shotaro Otsuka et al.   FEBS LETTERS

m6A-dependent maternal mRNA clearance facilitates zebrafish maternal-to-zygotic transition

(2017) Boxuan Simen Zhao et al.   NATURE

Postmitotic nuclear pore assembly proceeds by radial dilation of small membrane openings

(2017) Shotaro Otsuka et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Postmitotic nuclear pore assembly proceeds by radial dilation of small membrane openings

(2017) Shotaro Otsuka et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

The Nuclear Pore Complex as a Flexible and Dynamic Gate

(2016) Kevin E. Knockenhauer et al.   CELL

The nuclear pore complex: understanding its function through structural insight

(2016) Martin Beck et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

Regulation of zygotic genome activation and DNA damage checkpoint acquisition at the mid-blastula transition

(2015) Maomao Zhang et al.   CELL CYCLE

Zygotic Genome Activation During the Maternal-to-Zygotic Transition

(2014) Miler T. Lee et al.   Annual Review of Cell and Developmental Biology

Nuclear pore interactions with the genome

(2014) Varun Sood et al.   CURRENT OPINION IN GENETICS & DEVELOPMENT

Uracil-DNA Glycosylase Is Involved in DNA Demethylation and Required for Embryonic Development in the Zebrafish Embryo

(2014) Di Wu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Nucleosome assembly is required for nuclear pore complex assembly in mouse zygotes

(2014) Azusa Inoue et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Nucleosomal regulation of chromatin composition and nuclear assembly revealed by histone depletion

(2014) Christian Zierhut et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY

Glycosylation of the Nuclear Pore

(2014) Bin Li et al.   TRAFFIC

Maternal Eomesodermin regulates zygotic nodal gene expression for mesendoderm induction in zebrafish embryos

(2014) Pengfei Xu et al.   Journal of Molecular Cell Biology

Organizer-derived Bmp2 is required for the formation of a correct Bmp activity gradient during embryonic development

(2014) Yu Xue et al.   Nature Communications

The Earliest Transcribed Zygotic Genes Are Short, Newly Evolved, and Different across Species

(2014) Patricia Heyn et al.   Cell Reports

Nucleoporin Nup98 Associates with Trx/MLL and NSL Histone-Modifying Complexes and Regulates Hox Gene Expression

(2014) Pau Pascual-Garcia et al.   Cell Reports

Nanog, Pou5f1 and SoxB1 activate zygotic gene expression during the maternal-to-zygotic transition

(2013) Miler T. Lee et al.   NATURE

Pou5f1 Transcription Factor Controls Zygotic Gene Activation In Vertebrates

(2013) M. Leichsenring et al.   SCIENCE

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Fiji: an open-source platform for biological-image analysis

(2012) Johannes Schindelin et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

Multiscale dynamics in nucleocytoplasmic transport

(2011) David Grünwald et al.   CURRENT OPINION IN CELL BIOLOGY

Differential regulation of epiboly initiation and progression by zebrafish Eomesodermin A

(2011) Susan Du et al.   DEVELOPMENTAL BIOLOGY

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

The maternal-to-zygotic transition: a play in two acts

(2009) W. Tadros et al.   DEVELOPMENT

An essential role for the RNA-binding protein Smaug during the Drosophila maternal-to-zygotic transition

(2009) B. Benoit et al.   DEVELOPMENT

Flexible Gates: Dynamic Topologies and Functions for FG Nucleoporins in Nucleocytoplasmic Transport

(2009) Laura J. Terry et al.   EUKARYOTIC CELL

Global Transcriptional Repression in C. elegans Germline Precursors by Regulated Sequestration of TAF-4

(2008) Tugba Guven-Ozkan et al.   CELL

The zinc-finger protein Zelda is a key activator of the early zygotic genome in Drosophila

(2008) Hsiao-Lan Liang et al.   NATURE

Exploring RNA transcription and turnover in vivo by using click chemistry

(2008) C. Y. Jao et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A label-free quantification method by MS/MS TIC compared to SILAC and spectral counting in a proteomics screen

(2008) John M. Asara et al.   PROTEOMICS