Metal binding mediated conformational change of XPA protein:a potential cytotoxic mechanism of nickel in the nucleotide excision repair

Molecular Dynamics Simulations of Ternary Complexes: Comparisons of LEAFY Protein Binding to Different DNA Motifs

(2015) Hua Wan et al.   Journal of Chemical Information and Modeling

Structural Insight into Tetrameric hTRPV1 from Homology Modeling, Molecular Docking, Molecular Dynamics Simulation, Virtual Screening, and Bioassay Validations

(2015) Zhiwei Feng et al.   Journal of Chemical Information and Modeling

Tripartite DNA Lesion Recognition and Verification by XPC, TFIIH, and XPA in Nucleotide Excision Repair

(2015) Chia-Lung Li et al.   MOLECULAR CELL

Overview of xeroderma pigmentosum proteins architecture, mutations and post-translational modifications

(2015) Bruno César Feltes et al.   MUTATION RESEARCH-REVIEWS IN MUTATION RESEARCH

Structural insights into the recognition of cisplatin and AAF-dG lesion by Rad14 (XPA)

(2015) Sandra C. Koch et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characteristics and concepts of dynamic hub proteins in DNA processing machinery from studies of RPA

(2015) Norie Sugitani et al.   PROGRESS IN BIOPHYSICS & MOLECULAR BIOLOGY

Effects of hyperthermia on DNA repair pathways: one treatment to inhibit them all

(2015) Arlene L. Oei et al.   Radiation Oncology

Structural Refinement of Proteins by Restrained Molecular Dynamics Simulations with Non-interacting Molecular Fragments

(2015) Rong Shen et al.   PLoS Computational Biology

Effect of point substitutions within the minimal DNA-binding domain of xeroderma pigmentosum group a protein on interaction with DNA intermediates of nucleotide excision repair

(2014) E. A. Maltseva et al.   BIOCHEMISTRY-MOSCOW

ZDOCK server: interactive docking prediction of protein-protein complexes and symmetric multimers

(2014) B. G. Pierce et al.   BIOINFORMATICS

A new structural insight into XPA–DNA interactions

(2014) Benjamin Hilton et al.   BIOSCIENCE REPORTS

Modeling, Molecular Dynamics Simulation, and Mutation Validation for Structure of Cannabinoid Receptor 2 Based on Known Crystal Structures of GPCRs

(2014) Zhiwei Feng et al.   Journal of Chemical Information and Modeling

Discovery of a Potent Stapled Helix Peptide That Binds to the 70N Domain of Replication Protein A

(2014) Andreas O. Frank et al.   JOURNAL OF MEDICINAL CHEMISTRY

Redefining the DNA-Binding Domain of Human XPA

(2014) Norie Sugitani et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Molecular Dynamics Simulations and Principal Component Analysis on Human Laforin Mutation W32G and W32G/K87A

(2014) P. S. Srikumar et al.   PROTEIN JOURNAL

Rational Design of Particle Mesh Ewald Compatible Lennard-Jones Parameters for +2 Metal Cations in Explicit Solvent

(2013) Pengfei Li et al.   Journal of Chemical Theory and Computation

Principal Component Relaxation Mode Analysis of an All-Atom Molecular Dynamics Simulation of Human Lysozyme

(2013) Toshiki Nagai et al.   JOURNAL OF THE PHYSICAL SOCIETY OF JAPAN

Molecular Dynamics Simulations of DNA-Free and DNA-Bound TAL Effectors

(2013) Hua Wan et al.   PLoS One

Molecular mechanism of the interactions between inhibitory tripeptides and angiotensin-converting enzyme

(2012) Min Zhou et al.   BIOPHYSICAL CHEMISTRY

Molecular dynamics simulations of wild type and mutants of human complement receptor 2 complexed with C3d

(2012) Hua Wan et al.   PHYSICAL CHEMISTRY CHEMICAL PHYSICS

Cysteine and histidine shuffling: mixing and matching cysteine and histidine residues in zinc finger proteins to afford different folds and function

(2011) Jamie L. Michalek et al.   DALTON TRANSACTIONS

The xeroderma pigmentosum pathway: Decision tree analysis of DNA quality

(2011) Hanspeter Naegeli et al.   DNA REPAIR

Accelerating Protein Docking in ZDOCK Using an Advanced 3D Convolution Library

(2011) Brian G. Pierce et al.   PLoS One

Molecular Dynamics Simulation of HIV-1 Integrase Dimer Complexed with Viral DNA

(2010) Jianping Hu et al.   CHINESE JOURNAL OF CHEMISTRY

Functional characterization of iron-substituted neural zinc finger factor 1: metal and DNA binding

(2010) Angelique N. Besold et al.   JOURNAL OF BIOLOGICAL INORGANIC CHEMISTRY

Relation between Free Energy Landscapes of Proteins and Dynamics

(2010) Gia G. Maisuradze et al.   Journal of Chemical Theory and Computation

Structural Survey of Zinc-Containing Proteins and Development of the Zinc AMBER Force Field (ZAFF)

(2010) Martin B. Peters et al.   Journal of Chemical Theory and Computation

Conformations of Some Large-Ring Cyclodextrins Derived from Conformational Search with Molecular Dynamics Simulations and Principal Component Analysis

(2010) Petko M. Ivanov   JOURNAL OF PHYSICAL CHEMISTRY B

Apo and Nickel-Bound Forms of thePyrococcus horikoshiiSpecies of the Metalloregulatory Protein: NikR Characterized by Molecular Dynamics Simulations

(2009) Daniel J. Sindhikara et al.   BIOCHEMISTRY