4.4 Review

Microbial enzymes will offer limited solutions to the global plastic pollution crisis

Journal

MICROBIAL BIOTECHNOLOGY
Volume 16, Issue 2, Pages 195-217

Publisher

WILEY
DOI: 10.1111/1751-7915.14135

Keywords

-

Ask authors/readers for more resources

Global economies heavily rely on fossil-fuel-based polymers, but a significant amount of these synthetic polymers are disposed into the environment. Over the past decade, microbiologists have been searching for enzymes that can degrade plastic, but there have been limited success in finding functional biocatalysts for most plastics. The main challenge now is to identify enzymes that can target the majority of fossil-fuel-based plastics. This emerging research field is still in its infancy.
Global economies depend on the use of fossil-fuel-based polymers with 360-400 million metric tons of synthetic polymers being produced per year. Unfortunately, an estimated 60% of the global production is disposed into the environment. Within this framework, microbiologists have tried to identify plastic-active enzymes over the past decade. Until now, this research has largely failed to deliver functional biocatalysts acting on the commodity polymers such as polyethylene (PE), polypropylene (PP), polyvinylchloride (PVC), ether-based polyurethane (PUR), polyamide (PA), polystyrene (PS) and synthetic rubber (SR). However, few enzymes are known to act on low-density and low-crystalline (amorphous) polyethylene terephthalate (PET) and ester-based PUR. These above-mentioned polymers represent >95% of all synthetic plastics produced. Therefore, the main challenge microbiologists are currently facing is in finding polymer-active enzymes targeting the majority of fossil-fuel-based plastics. However, identifying plastic-active enzymes either to implement them in biotechnological processes or to understand their potential role in nature is an emerging research field. The application of these enzymes is still in its infancy. Here, we summarize the current knowledge on microbial plastic-active enzymes, their global distribution and potential impact on plastic degradation in industrial processes and nature. We further outline major challenges in finding novel plastic-active enzymes, optimizing known ones by synthetic approaches and problems arising through falsely annotated and unfiltered use of database entries. Finally, we highlight potential biotechnological applications and possible re- and upcycling concepts using microorganisms.

Authors

I am an author on this paper
Click your name to claim this paper and add it to your profile.

Reviews

Primary Rating

4.4
Not enough ratings

Secondary Ratings

Novelty
-
Significance
-
Scientific rigor
-
Rate this paper

Recommended

Article Biochemistry & Molecular Biology

Microorganisms harbor keys to a circular bioeconomy making them useful tools in fighting plastic pollution and rising CO2 levels

Garabed Antranikian, Wolfgang R. Streit

Summary: This article addresses the major global challenges of fossil fuel-driven climate change, global plastic pollution, and emerging plant, human, and animal infections. It emphasizes the need for a dramatic transformation in both science and society to meet these challenges and advocates for intense research and development in (bio)technology and industrial bioprocesses for a zero-carbon sustainable bioeconomy. The article highlights the significant role of microorganisms, especially extremophiles, as technology drivers in this transition, and outlines urgent areas of microbial research and technology advancements for a circular bioeconomy.

EXTREMOPHILES (2022)

Article Multidisciplinary Sciences

A novel metagenome-derived viral RNA polymerase and its application in a cell-free expression system for metagenome screening

Yuchen Han, Birhanu M. Kinfu, Fabian Blombach, Gwenny Cackett, Hongli Zhang, Pablo Perez-Garcia, Ines Krohn, Jesper Salomon, Volkan Besirlioglu, Tayebeh Mirzaeigarakani, Ulrich Schwaneberg, Jennifer Chow, Finn Werner, Wolfgang R. Streit

Summary: Metagenomics is a powerful tool to discover novel proteins and other valuable biomolecules. However, function-based metagenome searches are often limited by the time-consuming expression of active proteins. In this study, researchers identified a novel single-subunit bacteriophage RNA polymerase, EM1 RNAP, from a metagenome data set obtained from an elephant dung microbiome. They developed an efficient medium-throughput pipeline and protocol using EM1 RNAP and a translation-competent Escherichia coli extract to express metagenome-derived genes and produce proteins in a cell-free system, allowing for initial testing of predicted activities.

SCIENTIFIC REPORTS (2022)

Article Microbiology

Interplay between the microalgae Micrasterias radians and its symbiont Dyadobacter sp. HH091

Yekaterina Astafyeva, Marno Gurschke, Wolfgang R. Streit, Ines Krohn

Summary: Based on previous research, an artificial plant-bacteria system was established to study the mutualistic collaboration between a microalga and its microbiome. The study focused on the mechanism of a type IX secretion system (T9SS) and its role in the attachment and invasion of the microalga by a bacterial isolate. Genome analysis revealed the presence of T9SS genes and other genes associated with gliding motility and protein secretion. The study proposed a model for the T9SS apparatus of the bacterial isolate and examined the bacterial colonization and penetration into the cell wall of the microalga.

FRONTIERS IN MICROBIOLOGY (2022)

Article Biology

Interference and co-existence of staphylococci and Cutibacterium acnes within the healthy human skin microbiome

Charlotte Marie Ahle, Kristian Stodkilde, Anja Poehlein, Mechthild Boemeke, Wolfgang R. Streit, Horst Wenck, Joern Hendrik Reuter, Jennifer Huepeden, Holger Brueggemann

Summary: Research has found that the human skin is inhabited by a large number of microbes, collectively known as the skin microbiome. Among them, Staphylococcus epidermidis and Cutibacterium acnes are the most common members. The study reveals that Staphylococcus epidermidis can selectively exclude acne-associated bacteria and coexist with healthy skin-associated bacteria, thus contributing to the maintenance of healthy skin homeostasis through regulation of antimicrobial activity.

COMMUNICATIONS BIOLOGY (2022)

Article Biotechnology & Applied Microbiology

An Ultra-Sensitive Comamonas thiooxidans Biosensor for the Rapid Detection of Enzymatic Polyethylene Terephthalate (PET) Degradation

Robert F. Dierkes, Alan Wypych, Pablo Perez-Garcia, Dominik Danso, Jennifer Chow, Wolfgang R. Streit

Summary: A fluorescent biosensor based on Comamonas thiooxidans strain S23 was constructed in this study. This biosensor has high sensitivity and can detect the PET breakdown product TPA at concentrations as low as 10 μM. Therefore, it can be used for the detection of enzymatic PET breakdown products.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2023)

Article Biochemistry & Molecular Biology

Investigation of the halophilic PET hydrolase PET6 from Vibrio gazogenes

Sebastian Weigert, Pablo Perez-Garcia, Florian J. Gisdon, Andreas Gagsteiger, Kristine Schweinshaut, G. Matthias Ullmann, Jennifer Chow, Wolfgang R. Streit, Birte Hoecker

Summary: The handling of plastic waste and microplastic has become one of the greatest challenges of our time. Recent studies on plastic degrading enzymes have provided new prospects for biological decomposition and recycling. In this study, the candidate PET6 enzyme from Vibrio gazogenes was chosen for further investigation. The characterization of PET6 revealed its widespread occurrence in various Vibrio strains and its superior ability to degrade polyethylene terephthalate under high salt concentrations. Mutations from other PET degrading enzymes were introduced to PET6 to enhance its activity, demonstrating the evolutionary potential of the enzyme. The crystal structure and molecular dynamics simulations of PET6 provided insights into its adaptation to saline environments. The findings suggest that Vibrio and the PET6 enzyme are worthy subjects for studying PET degradation in marine environments.

PROTEIN SCIENCE (2022)

Article Biotechnology & Applied Microbiology

Improved mini-Tn7 Delivery Plasmids for Fluorescent Labeling of Stenotrophomonas maltophilia

Uwe Mamat, Manuel Hein, Doerte Grella, Claire S. Taylor, Thomas Scholzen, Ifey Alio, Wolfgang R. Streit, Pol Huedo, Xavier Coves, Oscar Conchillo-Sole, Andromeda-Celeste Gomez, Isidre Gibert, Daniel Yero, Ulrich E. Schaible

Summary: Using a Tn7-based genomic integration system, improved mini-Tn7 delivery plasmids were constructed to label S. maltophilia with sfGFP, mCherry, tdTomato, and mKate2. The transposition of mini-Tn7 transposons had no adverse effects on the fitness of fluorescently labeled S. maltophilia derivatives. The mini-Tn7 elements remained stably integrated in the genome of S. maltophilia over a prolonged period of time in the absence of antibiotic selection pressure.

APPLIED AND ENVIRONMENTAL MICROBIOLOGY (2023)

Review Polymer Science

Towards Sustainable Recycling of Epoxy-Based Polymers: Approaches and Challenges of Epoxy Biodegradation

Leon Klose, Neele Meyer-Heydecke, Sasipa Wongwattanarat, Jennifer Chow, Pablo Perez Garcia, Camille Carre, Wolfgang Streit, Garabed Antranikian, Ana Malvis Romero, Andreas Liese

Summary: Epoxy resins are highly valued for their properties and applications, but the challenge lies in their non-biodegradability and unsustainable recycling methods. Recent progress has been made in plastic biodegradation, but mainly focuses on other polymers, leaving epoxy underrepresented. This review examines the approaches and challenges in biodegradation and recycling of epoxy, and highlights the analytical techniques used.

POLYMERS (2023)

Article Biochemistry & Molecular Biology

The metagenome-derived esterase PET40 is highly promiscuous and hydrolyses polyethylene terephthalate (PET)

Hongli Zhang, Robert F. F. Dierkes, Pablo Perez-Garcia, Elisa Costanzi, Jonas Dittrich, Pablo A. A. Cea, Marno Gurschke, Violetta Applegate, Kristina Partus, Christel Schmeisser, Christopher Pfleger, Holger Gohlke, Sander H. J. Smits, Jennifer Chow, Wolfgang R. R. Streit

Summary: Polyethylene terephthalate (PET) is a widely used synthetic polymer that contaminates marine and terrestrial ecosystems. The diene lactone hydrolase PET40 has been identified as an esterase with activity on PET, along with a broad substrate spectrum. PET40 is highly conserved within the Gram-positive Amycolatopsis and Streptomyces genera.

FEBS JOURNAL (2023)

Article Biochemistry & Molecular Biology

Quantitative Insights and Visualization of Antimicrobial Tolerance in Mixed-Species Biofilms

Mandy Dittmer, Florian H. H. Brill, Andreas Kampe, Maria Geffken, Julian-Dario Rembe, Raphael Moll, Ifey Alio, Wolfgang R. Streit, Eike Sebastian Debus, Ralf Smeets, Ewa Klara Stuermer

Summary: Biofilms in hard-to-heal wounds are a significant issue, often composed of different species and resistant to antimicrobial agents. This study quantitatively analyzed the tolerance of dual-species wound biofilm models to antimicrobials and antimicrobial dressings, finding that the efficacy and tolerance were nearly species-independent.

BIOMEDICINES (2023)

No Data Available