Homologous gene regulatory networks control development of apical organs and brains in Bilateria

Foxq2 determines blue cone identity in zebrafish

(2021) Yohey Ogawa et al.   Science Advances

An ancestral apical brain region contributes to the central complex under the control of foxQ2 in the beetle Tribolium

(2019) Bicheng He et al.   eLife

Identification of neural transcription factors required for the differentiation of three neuronal subtypes in the sea urchin embryo

(2018) Leslie A. Slota et al.   DEVELOPMENTAL BIOLOGY

Embryonic neurogenesis in echinoderms

(2018) Veronica F. Hinman et al.   Wiley Interdisciplinary Reviews-Developmental Biology

Neurogenesis in the sea urchin embryo is initiated uniquely in three domains

(2018) David R. McClay et al.   DEVELOPMENT

PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools

(2018) Huaiyu Mi et al.   NUCLEIC ACIDS RESEARCH

eggNOG 5.0: a hierarchical, functionally and phylogenetically annotated orthology resource based on 5090 organisms and 2502 viruses

(2018) Jaime Huerta-Cepas et al.   NUCLEIC ACIDS RESEARCH

The Zebrafish Information Network: new support for non-coding genes, richer Gene Ontology annotations and the Alliance of Genome Resources

(2018) Leyla Ruzicka et al.   NUCLEIC ACIDS RESEARCH

The mouse Gene Expression Database (GXD): 2019 update

(2018) Constance M Smith et al.   NUCLEIC ACIDS RESEARCH

Convergent evolution of bilaterian nerve cords

(2017) José M. Martín-Durán et al.   NATURE

Standardized benchmarking in the quest for orthologs

(2016) Adrian M Altenhoff et al.   NATURE METHODS

Cooperative Wnt-Nodal Signals Regulate the Patterning of Anterior Neuroectoderm

(2016) Junko Yaguchi et al.   PLoS Genetics

The Evolution of Early Neurogenesis

(2015) Volker Hartenstein et al.   DEVELOPMENTAL CELL

Orchestration of Neuronal Differentiation and Progenitor Pool Expansion in the Developing Cortex by SoxC Genes

(2015) C. Chen et al.   JOURNAL OF NEUROSCIENCE

Embracing the comparative approach: how robust phylogenies and broader developmental sampling impacts the understanding of nervous system evolution

(2015) A. Hejnol et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Larval body patterning and apical organs are conserved in animal evolution

(2014) Heather Marlow et al.   BMC BIOLOGY

Transgenic analysis of a SoxB gene reveals neural progenitor cells in the cnidarian Nematostella vectensis

(2014) G. S. Richards et al.   DEVELOPMENT

Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo

(2014) Miao Cui et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SoxNeuro orchestrates central nervous system specification and differentiation in Drosophila and is only partially redundant with Dichaete

(2014) Enrico Ferrero et al.   GENOME BIOLOGY

Hierarchical Mechanisms for Direct Reprogramming of Fibroblasts to Neurons

(2013) Orly L. Wapinski et al.   CELL

Ectopic activation of the canonical wnt signaling pathway affects ectodermal patterning along the primary axis during larval development in the anthozoan Nematostella vectensis

(2013) Heather Marlow et al.   DEVELOPMENTAL BIOLOGY

Gene regulatory network for neurogenesis in a sea star embryo connects broad neural specification and localized patterning

(2013) K. A. Yankura et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evolution of bilaterian central nervous systems: a single origin?

(2013) Linda Z Holland et al.   EvoDevo

The Bilaterian Head Patterning Gene six3/6 Controls Aboral Domain Development in a Cnidarian

(2013) Chiara Sinigaglia et al.   PLOS BIOLOGY

Spatial expression of transcription factors in Drosophila embryonic organ development

(2013) Ann S Hammonds et al.   GENOME BIOLOGY

Direct and indirect control of oral ectoderm regulatory gene expression by Nodal signaling in the sea urchin embryo

(2012) Enhu Li et al.   DEVELOPMENTAL BIOLOGY

A comprehensive analysis of Delta signaling in pre-gastrular sea urchin embryos

(2012) Stefan C. Materna et al.   DEVELOPMENTAL BIOLOGY

Gene regulatory control in the sea urchin aboral ectoderm: Spatial initiation, signaling inputs, and cell fate lockdown

(2012) Smadar Ben-Tabou de-Leon et al.   DEVELOPMENTAL BIOLOGY

Ancient deuterostome origins of vertebrate brain signalling centres

(2012) Ariel M. Pani et al.   NATURE

Development of the larval anterior neurogenic domains of Terebratalia transversa (Brachiopoda) provides insights into the diversification of larval apical organs and the spiralian nervous system

(2012) Scott Santagata et al.   EvoDevo

Evolution of Gene Regulatory Networks Controlling Body Plan Development

(2011) Isabelle S. Peter et al.   CELL

The evolution of nervous system patterning: insights from sea urchin development

(2011) L. M. Angerer et al.   DEVELOPMENT

Zinc finger homeobox is required for the differentiation of serotonergic neurons in the sea urchin embryo

(2011) Junko Yaguchi et al.   DEVELOPMENTAL BIOLOGY

Sequentially acting Sox transcription factors in neural lineage development

(2011) M. Bergsland et al.   GENES & DEVELOPMENT

A gene regulatory network controlling the embryonic specification of endoderm

(2011) Isabelle S. Peter et al.   NATURE

Six3 demarcates the anterior-most developing brain region in bilaterian animals

(2011) Patrick RH Steinmetz et al.   EvoDevo

On the Origin and Evolution of the Tripartite Brain

(2010) Frank Hirth   BRAIN BEHAVIOR AND EVOLUTION

High accuracy, high-resolution prevalence measurement for the majority of locally expressed regulatory genes in early sea urchin development

(2010) Stefan C. Materna et al.   GENE EXPRESSION PATTERNS

A conserved cluster of three PRD-class homeobox genes (homeobrain, rx and orthopedia) in the Cnidaria and Protostomia

(2010) Maureen E Mazza et al.   EvoDevo

Conserved developmental expression of Fezf in chordates and Drosophila and the origin of the Zona Limitans Intrathalamica (ZLI) brain organizer

(2010) Manuel Irimia et al.   EvoDevo

Ancestral Regulatory Circuits Governing Ectoderm Patterning Downstream of Nodal and BMP2/4 Revealed by Gene Regulatory Network Analysis in an Echinoderm

(2010) Alexandra Saudemont et al.   PLoS Genetics

Wnt Signaling and the Polarity of the Primary Body Axis

(2009) Christian P. Petersen et al.   CELL

The sea urchin animal pole domain is a Six3-dependent neurogenic patterning center

(2009) Z. Wei et al.   DEVELOPMENT

A perturbation model of the gene regulatory network for oral and aboral ectoderm specification in the sea urchin embryo

(2009) Yi-Hsien Su et al.   DEVELOPMENTAL BIOLOGY

Xenbase: gene expression and improved integration

(2009) Jeff B. Bowes et al.   NUCLEIC ACIDS RESEARCH

A Novel Role for γ-Secretase in the Formation of Primitive Streak-like Intermediates from ES Cells in Culture

(2009) James N. Hughes et al.   STEM CELLS

A Wnt-FoxQ2-Nodal Pathway Links Primary and Secondary Axis Specification in Sea Urchin Embryos

(2008) Shunsuke Yaguchi et al.   DEVELOPMENTAL CELL

Direct multiplexed measurement of gene expression with color-coded probe pairs

(2008) Gary K Geiss et al.   NATURE BIOTECHNOLOGY

Insulinoma-Associated 1 Has a Panneurogenic Role and Promotes the Generation and Expansion of Basal Progenitors in the Developing Mouse Neocortex

(2008) Lilla M. Farkas et al.   NEURON

The three SoxC proteins—Sox4, Sox11 and Sox12—exhibit overlapping expression patterns and molecular properties

(2008) Peter Dy et al.   NUCLEIC ACIDS RESEARCH

The evolution of nervous system centralization

(2008) D. Arendt et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Six3 inactivation causes progressive caudalization and aberrant patterning of the mammalian diencephalon

(2007) A. Lavado et al.   DEVELOPMENT