Phylogenomic analysis of 997 nuclear genes reveals the need for extensive generic re-delimitation in Caesalpinioideae (Leguminosae)

Molecular and Morphological Analysis Supports the Separation of Robrichia as a Genus Distinct from Enterolobium (Leguminosae: Caesalpinioideae: Mimosoid Clade)

(2022) Élvia Rodrigues de Souza et al.   SYSTEMATIC BOTANY

The innovation of the symbiosome has enhanced the evolutionary stability of nitrogen fixation in legumes

(2022) Sergio M. de Faria et al.   NEW PHYTOLOGIST

New segregates from the Neotropical genus Stryphnodendron (Leguminosae, Caesalpinioideae, mimosoid clade)

(2022) Alexandre G. de Lima et al.   PhytoKeys

Disintegration of the genus Prosopis L. (Leguminosae, Caesalpinioideae, mimosoid clade)

(2022) Colin E. Hughes et al.   PhytoKeys

Dilemmas in generic delimitation of Senegalia and allies (Caesalpinioideae, mimosoid clade): how to reconcile phylogenomic evidence with morphology and taxonomy?

(2022) Vanessa Terra et al.   PhytoKeys

Re-circumscription of the mimosoid genus Entada including new combinations for all species of the phylogenetically nested Elephantorrhiza (Leguminosae, Caesalpinioideae, mimosoid clade)

(2022) Shawn A. O’Donnell et al.   PhytoKeys

Phylogeny and classification of the Australasian and Indomalayan mimosoid legumes Archidendron and Archidendropsis (Leguminosae, subfamily Caesalpinioideae, mimosoid clade)

(2022) Gillian K. Brown et al.   PhytoKeys

Re-establishment of the genus Pseudalbizzia (Leguminosae, Caesalpinioideae, mimosoid clade): the New World species formerly placed in Albizia

(2022) Gabriela Aviles Peraza et al.   PhytoKeys

Osodendron gen. nov. (Leguminosae, Caesalpinioideae), a new genus of mimosoid legumes of tropical Africa

(2022) Erik J. M. Koenen   PhytoKeys

Reinstatement of Ticanto (Leguminosae-Caesalpinioideae) – the final piece in the Caesalpinia group puzzle

(2022) Ruth P. Clark et al.   PhytoKeys

Phylogenomic assessment prompts recognition of the Serianthes clade and confirms the monophyly of Serianthes and its relationship with Falcataria and Wallaceodendron in the wider ingoid clade (Leguminosae, Caesalpinioideae)

(2022) Else Demeulenaere et al.   PhytoKeys

Boliviadendron, a new segregate genus of mimosoid legume (Leguminosae, Caesalpinioideae, mimosoid clade) narrowly endemic to the interior Andean valleys of Bolivia

(2022) Élvia Rodrigues de Souza et al.   PhytoKeys

A new generic circumscription of Hydrochorea (Leguminosae, Caesalpinioideae, mimosoid clade) with an amphi-Atlantic distribution

(2022) Marcos Vinicius Batista Soares et al.   PhytoKeys

Mezcala – a new segregate genus of mimosoid legume (Leguminosae, Caesalpinioideae, mimosoid clade) narrowly endemic to the Balsas Depression in Mexico

(2022) Colin E. Hughes et al.   PhytoKeys

Revisiting the phylogeny and taxonomy of the Pithecellobium clade (Leguminosae, Caesalpinioideae) with new generic circumscriptions

(2022) Iván Tamayo-Cen et al.   PhytoKeys

Misleading fruits: The non-monophyly of Pseudopiptadenia and Pityrocarpa supports generic re-circumscriptions and a new genus within mimosoid legumes

(2022) Leonardo M. Borges et al.   PhytoKeys

On the taxonomic affinity of Albizia carbonaria Britton (Leguminosae, Caesalpinioideae-mimosoid clade)

(2022) Erik J. M. Koenen   PhytoKeys

Reinstatement and recircumscription of Jupunba and Punjuba (Fabaceae) based on phylogenetic evidence

(2021) Marcos Vinicius Batista Soares et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Nuclear Phylotranscriptomics/Phylogenomics Support Numerous Polyploidization Events and Hypotheses for the Evolution of Rhizobial Nitrogen-Fixing Symbiosis in Fabaceae

(2021) Yiyong Zhao et al.   Molecular Plant

Unveiling the Patterns of Reticulated Evolutionary Processes with Phylogenomics: Hybridization and Polyploidy in the Genus Rosa

(2021) Kevin Debray et al.   SYSTEMATIC BIOLOGY

The Multispecies Coalescent Model Outperforms Concatenation Across Diverse Phylogenomic Data Sets

(2020) Xiaodong Jiang et al.   SYSTEMATIC BIOLOGY

Exploration of Plastid Phylogenomic Conflict Yields New Insights into the Deep Relationships of Leguminosae

(2020) Rong Zhang et al.   SYSTEMATIC BIOLOGY

Biomes as evolutionary arenas: Convergence and conservatism in the trans‐continental succulent biome

(2020) Jens J. Ringelberg et al.   GLOBAL ECOLOGY AND BIOGEOGRAPHY

Testing generic limits in Cercidoideae (Leguminosae): Insights from plastid and duplicated nuclear gene sequences

(2020) Carole Sinou et al.   TAXON

Out of Sight, Out of Mind: Widespread Nuclear and Plastid-Nuclear Discordance in the Flowering Plant Genus Polemonium (Polemoniaceae) Suggests Widespread Historical Gene Flow Despite Limited Nuclear Signal

(2020) Jeffrey P Rose et al.   SYSTEMATIC BIOLOGY

Hybrid capture of 964 nuclear genes resolves evolutionary relationships in the mimosoid legumes and reveals the polytomous origins of a large pantropical radiation

(2020) Erik J. M. Koenen et al.   AMERICAN JOURNAL OF BOTANY

Quartet-based computations of internode certainty provide robust measures of phylogenetic incongruence

(2019) Xiaofan Zhou et al.   SYSTEMATIC BIOLOGY

Reticulate evolution helps explain apparent homoplasy in floral biology and pollination in baobabs (Adansonia; Bombacoideae; Malvaceae)

(2019) Nisa Karimi et al.   SYSTEMATIC BIOLOGY

Phylogeny of the Neotropical legume genera Zygia and Marmaroxylon and close relatives

(2019) Julia Ferm et al.   TAXON

Hyb-Seq for Flowering Plant Systematics

(2019) Steven Dodsworth et al.   TRENDS IN PLANT SCIENCE

Large‐scale genomic sequence data resolve the deepest divergences in the legume phylogeny and support a near‐simultaneous evolutionary origin of all six subfamilies

(2019) Erik J. M. Koenen et al.   NEW PHYTOLOGIST

Taxonomic Delimitation of Species Complexes: A Challenge for Conservation; First Steps with the Abarema cochliacarpos Complex

(2019) Ethiéne Guerra et al.   SYSTEMATIC BOTANY

Quartet Sampling distinguishes lack of support from conflicting support in the green plant tree of life

(2018) James B. Pease et al.   AMERICAN JOURNAL OF BOTANY

ASTRAL-III: polynomial time species tree reconstruction from partially resolved gene trees

(2018) Chao Zhang et al.   BMC BIOINFORMATICS

Lachesiodendron, a new monospecific genus segregated from Piptadenia (Leguminosae: Caesalpinioideae: mimosoid clade): Evidence from morphology and molecules

(2018) Pétala Gomes Ribeiro et al.   TAXON

A new phylogeny-based tribal classification of subfamily Detarioideae, an early branching clade of florally diverse tropical arborescent legumes

(2018) Manuel de la Estrella et al.   Scientific Reports

Testing for Polytomies in Phylogenetic Species Trees Using Quartet Frequencies

(2018) et al.   Genes

An evaluation of alternative explanations for widespread cytonuclear discordance in annual sunflowers (Helianthus )

(2018) Julie A. Lee-Yaw et al.   NEW PHYTOLOGIST

Evolution of Portulacineae Marked by Gene Tree Conflict and Gene Family Expansion Associated with Adaptation to Harsh Environments

(2018) Ning Wang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Global Succulent Biome phylogenetic conservatism across the pantropical Caesalpinia Group (Leguminosae)

(2018) Edeline Gagnon et al.   NEW PHYTOLOGIST

A Universal Probe Set for Targeted Sequencing of 353 Nuclear Genes from Any Flowering Plant Designed Using k-Medoids Clustering

(2018) Matthew G Johnson et al.   SYSTEMATIC BIOLOGY

First plastid phylogenomic study reveals potential cyto-nuclear discordance in the evolutionary history of Ficus L. (Moraceae)

(2017) Sam Bruun-Lund et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Biogeography of nodulated legumes and their nitrogen-fixing symbionts

(2017) Janet I. Sprent et al.   NEW PHYTOLOGIST

ParasenegaliaandPseudosenegalia(Fabaceae): New Genera of the Mimosoideae

(2017) David S. Seigler et al.   NOVON

Targeted Enrichment of Large Gene Families for Phylogenetic Inference: Phylogeny and Molecular Evolution of Photosynthesis Genes in the Portullugo Clade (Caryophyllales)

(2017) Abigail J Moore et al.   SYSTEMATIC BIOLOGY

Phylogenetic Relationships in Senegalia (Leguminosae-Mimosoideae) Emphasizing the South American Lineages

(2017) Vanessa Terra et al.   SYSTEMATIC BOTANY

Molecular Phylogenetics of Parasenegalia and Pseudosenegalia (Fabaceae: Mimosoideae)

(2017) Joseph T. Miller et al.   SYSTEMATIC BOTANY

A new subfamily classification of the Leguminosae based on a taxonomically comprehensive phylogeny – The Legume Phylogeny Working Group (LPWG)

(2017) Nasim Azani et al.   TAXON

Contentious relationships in phylogenomic studies can be driven by a handful of genes

(2017) Xing-Xing Shen et al.   Nature Ecology & Evolution

An introduction to plant phylogenomics with a focus on palms

(2016) Craig F. Barrett et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

A Preliminary Molecular Phylogeny of the Abarema Alliance (Leguminosae) and Implications for Taxonomic Rearrangement

(2016) João R. V. Iganci et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Molecular Phylogeny of Stryphnodendron (Mimosoideae, Leguminosae) and Generic Delimitations in the Piptadenia Group

(2016) Marcelo F. Simon et al.   INTERNATIONAL JOURNAL OF PLANT SCIENCES

Retrieval of hundreds of nuclear loci from herbarium specimens

(2016) Michelle L. Hart et al.   TAXON

A new species of Abarema (Fabaceae) from Brazil

(2016) ETHIÉNE GUERRA et al.   Phytotaxa

HybPiper: Extracting Coding Sequence and Introns for Phylogenetics from High-Throughput Sequencing Reads Using Target Enrichment

(2016) Matthew G. Johnson et al.   Applications in Plant Sciences

A new generic system for the pantropical Caesalpinia group (Leguminosae)

(2016) Edeline Gagnon et al.   PhytoKeys

Analysis of phylogenomic datasets reveals conflict, concordance, and gene duplications with examples from animals and plants

(2015) Stephen A Smith et al.   BMC EVOLUTIONARY BIOLOGY

Phylogenetic position of Madagascan species ofAcacia s.l.and new combinations inSenegaliaandVachellia(Fabaceae, Mimosoideae, Acacieae)

(2015) James S. Boatwright et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Using targeted enrichment of nuclear genes to increase phylogenetic resolution in the neotropical rain forest genus Inga (Leguminosae: Mimosoideae)

(2015) James A. Nicholls et al.   Frontiers in Plant Science

RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies

(2014) Alexandros Stamatakis   BIOINFORMATICS

Orthology Inference in Nonmodel Organisms Using Transcriptomes and Low-Coverage Genomes: Improving Accuracy and Matrix Occupancy for Phylogenomics

(2014) Ya Yang et al.   MOLECULAR BIOLOGY AND EVOLUTION

Phylogeny of Calliandra (Leguminosae: Mimosoideae) based on nuclear and plastid molecular markers

(2014) Élvia Rodrigues de Souza et al.   TAXON

Phylogenetic measures of biodiversity and neo- and paleo-endemism in Australian Acacia

(2014) Brent D. Mishler et al.   Nature Communications

Comparative dating of Acacia: combining fossils and multiple phylogenies to infer ages of clades with poor fossil records

(2013) Joseph T. Miller et al.   AUSTRALIAN JOURNAL OF BOTANY

Phylogenetic position and revised classification ofAcacia s.l.(Fabaceae: Mimosoideae) in Africa, including new combinations inVachelliaandSenegalia

(2013) Bruce Kyalangalilwa et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

Inferring ancient divergences requires genes with strong phylogenetic signals

(2013) Leonidas Salichos et al.   NATURE

Reconstructing the deep-branching relationships of the papilionoid legumes

(2013) D. Cardoso et al.   SOUTH AFRICAN JOURNAL OF BOTANY

PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment

(2013) Nicolas Lartillot et al.   SYSTEMATIC BIOLOGY

Legume phylogeny and classification in the 21st century: Progress, prospects and lessons for other species-rich clades

(2013)   TAXON

Evolutionary and taxonomic relationships of Acacia s.l. (Leguminosae: Mimosoideae)

(2012) Joseph T. Miller et al.   AUSTRALIAN SYSTEMATIC BOTANY

Phylogeny reconstruction in the Caesalpinieae grade (Leguminosae) based on duplicated copies of the sucrose synthase gene and plastid markers

(2012) Vincent Manzanilla et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Pruning Rogue Taxa Improves Phylogenetic Accuracy: An Efficient Algorithm and Webservice

(2012) Andre J. Aberer et al.   SYSTEMATIC BIOLOGY

The evolutionary history of Mimosa (Leguminosae): Toward a phylogeny of the sensitive plants

(2011) Marcelo F. Simon et al.   AMERICAN JOURNAL OF BOTANY

The complex evolutionary dynamics of ancient and recent polyploidy in Leucaena (Leguminosae; Mimosoideae)

(2011) Rajanikanth Govindarajulu et al.   AMERICAN JOURNAL OF BOTANY

Relationships of the Australo-Malesian genus Paraserianthes (Mimosoideae: Leguminosae) identifies the sister group of Acacia sensu stricto and two biogeographical tracks

(2011) Gillian K. Brown et al.   CLADISTICS

phytools: an R package for phylogenetic comparative biology (and other things)

(2011) Liam J. Revell   Methods in Ecology and Evolution

Evolution of pollen, stigmas and ovule numbers at the caesalpinioid-mimosoid interface (Fabaceae)

(2010) HANNAH BANKS et al.   BOTANICAL JOURNAL OF THE LINNEAN SOCIETY

LARGE-SCALE PATTERNS OF DIVERSIFICATION IN THE WIDESPREAD LEGUME GENUS SENNA AND THE EVOLUTIONARY ROLE OF EXTRAFLORAL NECTARIES

(2010) Brigitte Marazzi et al.   EVOLUTION

The evolutionary history and biogeography of Mimosoideae (Leguminosae): An emphasis on African acacias

(2010) Yanis Bouchenak-Khelladi et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Neotropical mutualism between Acacia and Pseudomyrmex: Phylogeny and divergence times

(2010) Sandra Gómez-Acevedo et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Chromosome numbers in the genus Mimosa L.: cytotaxonomic and evolutionary implications

(2010) Nair Dahmer et al.   PLANT SYSTEMATICS AND EVOLUTION

Molecular phylogeny and diversification history of Prosopis (Fabaceae: Mimosoideae)

(2008) SANTIAGO ANDRÉS CATALANO et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Phylogenetic patterns and diversification in the caesalpinioid legumesThis paper is one of a selection of papers published in the Special Issue on Systematics Research.

(2008) Anne Bruneau et al.   Botany

Acacia s.s. and its Relationship Among Tropical Legumes, Tribe Ingeae (Leguminosae: Mimosoideae)

(2008) Gillian K. Brown et al.   SYSTEMATIC BOTANY