Two different domain architectures generate structural and functional diversity among bZIP genes in the Solanaceae family

Identification of novel PHD-finger genes in pepper by genomic re-annotation and comparative analyses

(2022) Ji-Yoon Guk et al.   BMC PLANT BIOLOGY

Systematic Analysis of the bZIP Family in Tobacco and Functional Characterization of NtbZIP62 Involvement in Salt Stress

(2021) Zhiyuan Li et al.   Agronomy-Basel

Identification and Analysis of bZIP Family Genes in Potato and Their Potential Roles in Stress Responses

(2021) Qi Wang et al.   Frontiers in Plant Science

Comparative Analysis of Re-Annotated Genes Provides Insight into Evolutionary Divergence and Expressions of Aquaporin Family in Pepper

(2021) Yeon Mi Lee et al.   Plants-Basel

Recurrent mutations promote widespread structural and functional divergence of MULE-derived genes in plants

(2021) Geun Young Chae et al.   NUCLEIC ACIDS RESEARCH

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Characterization of the bZIP Transcription Factor Family in Pepper (Capsicum annuum L.): CabZIP25 Positively Modulates the Salt Tolerance

(2020) Wen-Xian Gai et al.   Frontiers in Plant Science

Transcriptome profiling of abiotic responses to heat, cold, salt, and osmotic stress of Capsicum annuum L.

(2020) Won-Hee Kang et al.   Scientific Data

TGFam‐Finder: a novel solution for target‐gene family annotation in plants

(2020) Seungill Kim et al.   NEW PHYTOLOGIST

Construction of a chromosome-scale long-read reference genome assembly for potato

(2020) Gina M Pham et al.   GigaScience

Insight into the bZIP Gene Family in Solanum tuberosum: Genome and Transcriptome Analysis to Understand the Roles of Gene Diversification in Spatiotemporal Gene Expression and Function

(2020) Venura Herath et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Genome of Solanum pimpinellifolium provides insights into structural variants during tomato breeding

(2020) Xin Wang et al.   Nature Communications

Graph-based genome alignment and genotyping with HISAT2 and HISAT-genotype

(2019) Daehwan Kim et al.   NATURE BIOTECHNOLOGY

A comparison of the nutrient composition and statistical profile in red pepper fruits (Capsicums annuum L.) based on genetic and environmental factors

(2019) Eun-Ha Kim et al.   Applied Biological Chemistry

The Arabidopsis bZIP transcription factor family — an update

(2018) Wolfgang Dröge-Laser et al.   CURRENT OPINION IN PLANT BIOLOGY

Alcohol dehydrogenase 1 ( ADH1 ) confers both abiotic and biotic stress resistance in Arabidopsis

(2017) Haitao Shi et al.   PLANT SCIENCE

SlbZIP38, a Tomato bZIP Family Gene Downregulated by Abscisic Acid, Is a Negative Regulator of Drought and Salt Stress Tolerance

(2017) Yanglu Pan et al.   Genes

Genome-wide analysis of the basic leucine zipper (bZIP) transcription factor gene family in six legume genomes

(2015) Zhihui Wang et al.   BMC GENOMICS

Genome-wide systematic characterization of the bZIP transcriptional factor family in tomato (Solanum lycopersicum L.)

(2015) Dayong Li et al.   BMC GENOMICS

Temporal transcriptome profiling reveals expression partitioning of homeologous genes contributing to heat and drought acclimation in wheat (Triticum aestivum L.)

(2015) Zhenshan Liu et al.   BMC PLANT BIOLOGY

A nuclear-localized histone-gene binding protein from rice (OsHBP1b) functions in salinity and drought stress tolerance by maintaining chlorophyll content and improving the antioxidant machinery

(2015) Nita Lakra et al.   JOURNAL OF PLANT PHYSIOLOGY

StringTie enables improved reconstruction of a transcriptome from RNA-seq reads

(2015) Mihaela Pertea et al.   NATURE BIOTECHNOLOGY

Ectopic expression of a hot pepper bZIP-like transcription factor in potato enhances drought tolerance without decreasing tuber yield

(2015) Seok-Jun Moon et al.   PLANT MOLECULAR BIOLOGY

The Elucidation of the Interactome of 16 Arabidopsis bZIP Factors Reveals Three Independent Functional Networks

(2015) Carles Marco Llorca et al.   PLoS One

InterProScan 5: genome-scale protein function classification

(2014) P. Jones et al.   BIOINFORMATICS

Genome-wide analysis and expression profile of the bZIP transcription factor gene family in grapevine (Vitis vinifera)

(2014) Jinyi Liu et al.   BMC GENOMICS

The genome of the stress-tolerant wild tomato species Solanum pennellii

(2014) Anthony Bolger et al.   NATURE GENETICS

Genome sequence of the hot pepper provides insights into the evolution of pungency in Capsicum species

(2014) Seungill Kim et al.   NATURE GENETICS

The Sol Genomics Network (SGN)—from genotype to phenotype to breeding

(2014) Noe Fernandez-Pozo et al.   NUCLEIC ACIDS RESEARCH

Systemic Acquired Resistance: Turning Local Infection into Global Defense

(2013) Zheng Qing Fu et al.   Annual Review of Plant Biology

Production of Pharmaceutical Proteins in Solanaceae Food Crops

(2013) Maria Rigano et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Plant bZIP Transcription Factors Responsive to Pathogens: A Review

(2013) Murilo Alves et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

OsbZIP71, a bZIP transcription factor, confers salinity and drought tolerance in rice

(2013) Citao Liu et al.   PLANT MOLECULAR BIOLOGY

Genome-Wide Analysis of bZIP-Encoding Genes in Maize

(2012) K. Wei et al.   DNA RESEARCH

A Draft Genome Sequence of Nicotiana benthamiana to Enhance Molecular Plant-Microbe Biology Research

(2012) Aureliano Bombarely et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

The plant heat stress transcription factor (Hsf) family: Structure, function and evolution

(2011) Klaus-Dieter Scharf et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses

(2009) S. Capella-Gutierrez et al.   BIOINFORMATICS

PlnTFDB: updated content and new features of the plant transcription factor database

(2009) Paulino Pérez-Rodríguez et al.   NUCLEIC ACIDS RESEARCH

AREB1, AREB2, and ABF3 are master transcription factors that cooperatively regulate ABRE-dependent ABA signaling involved in drought stress tolerance and require ABA for full activation

(2009) Takuya Yoshida et al.   PLANT JOURNAL

The bZIP transcription factor OsABF1 is an ABA responsive element binding factor that enhances abiotic stress signaling in rice

(2009) Md. Amir Hossain et al.   PLANT MOLECULAR BIOLOGY

The Role of bZIP Transcription Factors in Green Plant Evolution: Adaptive Features Emerging from Four Founder Genes

(2008) Luiz Gustavo Guedes Corrêa et al.   PLoS One