Training in metabolomics research. II. Processing and statistical analysis of metabolomics data, metabolite identification, pathway analysis, applications of metabolomics and its future

Training in metabolomics research. I. Designing the experiment, collecting and extracting samples and generating metabolomics data

(2016) Stephen Barnes et al.   JOURNAL OF MASS SPECTROMETRY

Merging Open-Tubular and Packed Bed Liquid Chromatography

(2015) Gert Desmet et al.   ANALYTICAL CHEMISTRY

Rapid Evaporative Ionization Mass Spectrometry Imaging Platform for Direct Mapping from Bulk Tissue and Bacterial Growth Media

(2015) Ottmar Golf et al.   ANALYTICAL CHEMISTRY

High-Resolution Twin-Ion Metabolite Extraction (HiTIME) Mass Spectrometry: Nontargeted Detection of Unknown Drug Metabolites by Isotope Labeling, Liquid Chromatography Mass Spectrometry, and Automated High-Performance Computing

(2015) Michael G. Leeming et al.   ANALYTICAL CHEMISTRY

Discriminating precursors of common fragments for large-scale metabolite profiling by triple quadrupole mass spectrometry

(2015) Igor Nikolskiy et al.   BIOINFORMATICS

Spatially Resolved Metabolic Phenotyping of Breast Cancer by Desorption Electrospray Ionization Mass Spectrometry

(2015) S. Guenther et al.   CANCER RESEARCH

Metabolomics and Natural-Products Strategies to Study Chemical Ecology in Nematodes

(2015) Arthur S. Edison et al.   INTEGRATIVE AND COMPARATIVE BIOLOGY

Pyruvate carboxylase is critical for non–small-cell lung cancer proliferation

(2015) Katherine Sellers et al.   JOURNAL OF CLINICAL INVESTIGATION

High-resolution MALDI-FT-ICR MS imaging for the analysis of metabolites from formalin-fixed, paraffin-embedded clinical tissue samples

(2015) Achim Buck et al.   JOURNAL OF PATHOLOGY

MetaboAnalyst 3.0—making metabolomics more meaningful

(2015) Jianguo Xia et al.   NUCLEIC ACIDS RESEARCH

Effects of age, sex, and genotype on high-sensitivity metabolomic profiles in the fruit fly,Drosophila melanogaster

(2014) Jessica M. Hoffman et al.   AGING CELL

Interactive XCMS Online: Simplifying Advanced Metabolomic Data Processing and Subsequent Statistical Analyses

(2014) Harsha Gowda et al.   ANALYTICAL CHEMISTRY

Intensity drift removal in LC/MS metabolomics by common variance compensation

(2014) Francesc Fernández-Albert et al.   BIOINFORMATICS

Comparative evaluation of eight software programs for alignment of gas chromatography–mass spectrometry chromatograms in metabolomics experiments

(2014) Weihuan Niu et al.   JOURNAL OF CHROMATOGRAPHY A

Enhanced lipid isomer separation in human plasma using reversed-phase UPLC with ion-mobility/high-resolution MS detection

(2014) Carola W. N. Damen et al.   JOURNAL OF LIPID RESEARCH

High Resolution MALDI Imaging Mass Spectrometry of Retinal Tissue Lipids

(2014) David M. G. Anderson et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Autophagy is essential for effector CD8+ T cell survival and memory formation

(2014) Xiaojin Xu et al.   NATURE IMMUNOLOGY

CFM-ID: a web server for annotation, spectrum prediction and metabolite identification from tandem mass spectra

(2014) Felicity Allen et al.   NUCLEIC ACIDS RESEARCH

Improved spatial resolution of matrix-assisted laser desorption/ionization imaging of lipids in the brain by alkylated derivatives of 2,5-dihydroxybenzoic acid

(2014) D. A. Stoyanovsky et al.   RAPID COMMUNICATIONS IN MASS SPECTROMETRY

MetFusion: integration of compound identification strategies

(2013) Michael Gerlich et al.   JOURNAL OF MASS SPECTROMETRY

Metabolic Reprogramming for Producing Energy and Reducing Power in Fumarate Hydratase Null Cells from Hereditary Leiomyomatosis Renal Cell Carcinoma

(2013) Youfeng Yang et al.   PLoS One

Intraoperative Tissue Identification Using Rapid Evaporative Ionization Mass Spectrometry

(2013) J. Balog et al.   Science Translational Medicine

Predicting Network Activity from High Throughput Metabolomics

(2013) Shuzhao Li et al.   PLoS Computational Biology

Analysis of colorectal adenocarcinoma tissue by desorption electrospray ionization mass spectrometric imaging

(2012) Stefanie Gerbig et al.   ANALYTICAL AND BIOANALYTICAL CHEMISTRY

XCMS Online: A Web-Based Platform to Process Untargeted Metabolomic Data

(2012) Ralf Tautenhahn et al.   ANALYTICAL CHEMISTRY

A View from Above: Cloud Plots to Visualize Global Metabolomic Data

(2012) Gary J. Patti et al.   ANALYTICAL CHEMISTRY

Glucose-Independent Glutamine Metabolism via TCA Cycling for Proliferation and Survival in B Cells

(2012) Anne Le et al.   Cell Metabolism

Enhanced Detection and Characterization of Glutathione-Trapped Reactive Metabolites by Pseudo-MS3 Transition Using a Linear Ion Trap Mass Spectrometer

(2012) Xiaochun Zhu et al.   CHEMICAL RESEARCH IN TOXICOLOGY

Reprogramming of proline and glutamine metabolism contributes to the proliferative and metabolic responses regulated by oncogenic transcription factor c-MYC

(2012) W. Liu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Optimized Preprocessing of Ultra-Performance Liquid Chromatography/Mass Spectrometry Urinary Metabolic Profiles for Improved Information Recovery

(2011) Kirill A. Veselkov et al.   ANALYTICAL CHEMISTRY

Applying stable isotopes to examine food-web structure: an overview of analytical tools

(2011) Craig A. Layman et al.   BIOLOGICAL REVIEWS

Electrospray Post-Ionization Mass Spectrometry of Electrosurgical Aerosols

(2011) Sabine Guenther et al.   JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

Daily variation of serum acylcarnitines and amino acids

(2011) Dana K. Thompson et al.   Metabolomics

metaXCMS: Second-Order Analysis of Untargeted Metabolomics Data

(2010) Ralf Tautenhahn et al.   ANALYTICAL CHEMISTRY

MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data

(2010) Tomáš Pluskal et al.   BMC BIOINFORMATICS

The Biochemistry, Chemistry and Physiology of the Isoflavones in Soybeans and their Food Products

(2010) Stephen Barnes   Lymphatic Research and Biology

mzML—a Community Standard for Mass Spectrometry Data

(2010) Lennart Martens et al.   MOLECULAR & CELLULAR PROTEOMICS

Monitoring Dynamic Changes in Lymph Metabolome of Fasting and Fed Rats by Electrospray Ionization-Ion Mobility Mass Spectrometry (ESI-IMMS)

(2009) Kimberly Kaplan et al.   ANALYTICAL CHEMISTRY

Recursive Segment-Wise Peak Alignment of Biological1H NMR Spectra for Improved Metabolic Biomarker Recovery

(2009) Kirill A. Veselkov et al.   ANALYTICAL CHEMISTRY

icoshift: A versatile tool for the rapid alignment of 1D NMR spectra

(2009) F. Savorani et al.   JOURNAL OF MAGNETIC RESONANCE

The human superorganism – Of microbes and men

(2009) Roy D. Sleator   MEDICAL HYPOTHESES

Altered regulation of metabolic pathways in human lung cancer discerned by 13C stable isotope-resolved metabolomics (SIRM)

(2009) Teresa WM Fan et al.   Molecular Cancer

Highly sensitive feature detection for high resolution LC/MS

(2008) Ralf Tautenhahn et al.   BMC BIOINFORMATICS

Desorption electrospray ionization mass spectrometry: Imaging drugs and metabolites in tissues

(2008) J. M. Wiseman et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Evaluating Statistical Methods Using Plasmode Data Sets in the Age of Massive Public Databases: An Illustration Using False Discovery Rates

(2008) Gary L. Gadbury et al.   PLoS Genetics