Identification and genomic characterization of major effect bacterial blight resistance locus (BB-13) in Upland cotton (Gossypium hirsutum L.)

Physical geography, isolation by distance and environmental variables shape genomic variation of wild barley (Hordeum vulgare L. ssp. spontaneum) in the Southern Levant

(2022) Che-Wei Chang et al.   HEREDITY

Analyzing Quantitative Trait Loci for Fiber Quality and Yield-Related Traits From a Recombinant Inbred Line Population With Gossypium hirsutum Race palmeri as One Parent

(2022) Xueying Liu et al.   Frontiers in Plant Science

rMVP: A Memory-efficient, Visualization-enhanced, and Parallel-accelerated tool for Genome-Wide Association Study

(2021) Lilin Yin et al.   GENOMICS PROTEOMICS & BIOINFORMATICS

High‐density Linkage Map Construction and QTL Analysis of Fiber Quality and Lint Percentage in Tetraploid Cotton ( Gossypium hirsutum L.)

(2021) Linglong Zhu et al.   CROP SCIENCE

Evaluation and genome-wide association study of resistance to bacterial blight race 18 in U.S. Upland cotton germplasm

(2021) Hanan Elassbli et al.   MOLECULAR GENETICS AND GENOMICS

Interactive Tree Of Life (iTOL) v5: an online tool for phylogenetic tree display and annotation

(2021) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Fast two-stage phasing of large-scale sequence data

(2021) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

Genome-Wide Association Analysis Reveals Loci and Candidate Genes Involved in Fiber Quality Traits Under Multiple Field Environments in Cotton (Gossypium hirsutum)

(2021) Xiaohui Song et al.   Frontiers in Plant Science

Genome-Wide Association Mapping of Mixed Linkage (1,3;1,4)-β-Glucan and Starch Contents in Rice Whole Grain

(2021) Rahele Panahabadi et al.   Frontiers in Plant Science

Response of Xanthomonas citri pv. malvacearum isolates to cotton differing in susceptibility to the bacterium and their predicted type III effectors.

(2021) Terry A Wheeler et al.   Plant Health Progress

Genomic diversifications of five Gossypium allopolyploid species and their impact on cotton improvement

(2020) Z. Jeffrey Chen et al.   NATURE GENETICS

Bacterial blight resistance in cotton: genetic basis and molecular mapping

(2020) Jinfa Zhang et al.   EUPHYTICA

Dissection of the genetic variation and candidate genes of lint percentage by a genome-wide association study in upland cotton

(2019) Chengxiang Song et al.   THEORETICAL AND APPLIED GENETICS

Genome mapping and molecular markers identification for yield, yield component and fibre quality traits in tetraploid cotton

(2019) U. M. Ramesh et al.   PLANT BREEDING

Identification of candidate genes for key fibre‐related QTL s and derivation of favourable alleles in Gossypium hirsutum recombinant inbred lines with G. barbadense introgressions

(2019) Furong Wang et al.   PLANT BIOTECHNOLOGY JOURNAL

Linkage disequilibrium and haplotype block patterns in popcorn populations

(2019) Andréa Carla Bastos Andrade et al.   PLoS One

High-density linkage map construction and QTL analyses for fiber quality, yield and morphological traits using CottonSNP63K array in upland cotton (Gossypium hirsutum L.)

(2019) Kuang Zhang et al.   BMC GENOMICS

A genome-wide association study uncovers consistent quantitative trait loci for resistance to Verticillium wilt and Fusarium wilt race 4 in the US Upland cotton

(2019) Abdelraheem Abdelraheem et al.   THEORETICAL AND APPLIED GENETICS

ape 5.0: an environment for modern phylogenetics and evolutionary analyses in R

(2018) Emmanuel Paradis et al.   BIOINFORMATICS

Genetic Map Construction and Fiber Quality QTL Mapping Using the CottonSNP80K Array in Upland Cotton

(2018) Zhaoyun Tan et al.   Frontiers in Plant Science

A One-Penny Imputed Genome from Next-Generation Reference Panels

(2018) Brian L. Browning et al.   AMERICAN JOURNAL OF HUMAN GENETICS

63K SNP chip based linkage mapping and QTL analysis for fibre quality and yield component traits in Gossypium barbadense L. cotton

(2018) N. V. Mohan Kumar et al.   EUPHYTICA

Double-slit photoelectron interference in strong-field ionization of the neon dimer

(2018) Maksim Kunitski et al.   Nature Communications

Genome-Wide Association Study Identifies Candidate Genes Related to Seed Oil Composition and Protein Content in Gossypium hirsutum L.

(2018) Yanchao Yuan et al.   Frontiers in Plant Science

The DELLA protein SLR1 integrates and amplifies salicylic acid- and jasmonic acid-dependent innate immunity in rice

(2016) David de Vleesschauwer et al.   PLANT PHYSIOLOGY

Plant Ribosomal Proteins, RPL12 and RPL19, Play a Role in Nonhost Disease Resistance against Bacterial Pathogens

(2016) Satish Nagaraj et al.   Frontiers in Plant Science

Genome-Wide SNP Linkage Mapping and QTL Analysis for Fiber Quality and Yield Traits in the Upland Cotton Recombinant Inbred Lines Population

(2016) Cong Li et al.   Frontiers in Plant Science

ClicO FS: an interactive web-based service of Circos: Fig. 1.

(2015) Wei-Hien Cheong et al.   BIOINFORMATICS

A Multivariate Genome-Wide Association Analysis of 10 LDL Subfractions, and Their Response to Statin Treatment, in 1868 Caucasians

(2015) Heejung Shim et al.   PLoS One

Development of a 63K SNP Array for Cotton and High-Density Mapping of Intraspecific and Interspecific Populations of Gossypium spp.

(2015) A. M. Hulse-Kemp et al.   G3-Genes Genomes Genetics

Novel R tools for analysis of genome-wide population genetic data with emphasis on clonality

(2015) Zhian N. Kamvar et al.   Frontiers in Genetics

Interactions of Xanthomonas type-III effector proteins with the plant ubiquitin and ubiquitin-like pathways

(2014) Suayib Ãœstün et al.   Frontiers in Plant Science

Nicotiana benthamiana Calreticulin 3a Is Required for the Ethylene-Mediated Production of Phytoalexins and Disease Resistance Against Oomycete Pathogen Phytophthora infestans

(2013) Mizuki Matsukawa et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

Genetic diversity and population structure in the US Upland cotton (Gossypium hirsutum L.)

(2013) Priyanka Tyagi et al.   THEORETICAL AND APPLIED GENETICS

TAL effectors: highly adaptable phytobacterial virulence factors and readily engineered DNA-targeting proteins

(2013) Erin L. Doyle et al.   TRENDS IN CELL BIOLOGY

A Whole-Genome DNA Marker Map for Cotton Based on the D-Genome Sequence of Gossypium raimondii L.

(2013) Zining Wang et al.   G3-Genes Genomes Genetics

Plant–bacterial pathogen interactions mediated by type III effectors

(2012) Feng Feng et al.   CURRENT OPINION IN PLANT BIOLOGY

The Arabidopsis DELLA RGA-LIKE3 Is a Direct Target of MYC2 and Modulates Jasmonate Signaling Responses

(2012) M. Wild et al.   PLANT CELL

STRUCTURE HARVESTER: a website and program for visualizing STRUCTURE output and implementing the Evanno method

(2011) Dent A. Earl et al.   Conservation Genetics Resources

DELLAs Modulate Jasmonate Signaling via Competitive Binding to JAZs

(2010) Xingliang Hou et al.   DEVELOPMENTAL CELL

Computational approaches and software tools for genetic linkage map estimation in plants

(2009) J. Cheema et al.   BRIEFINGS IN BIOINFORMATICS

The transcription factor OsNAC4 is a key positive regulator of plant hypersensitive cell death

(2009) Takashi Kaneda et al.   EMBO JOURNAL

A SNP haplotype associated with a gene resistant to Xanthomonas axonopodis pv. malvacearum in upland cotton (Gossypium hirsutum L.)

(2009) Jinhua Xiao et al.   MOLECULAR BREEDING

Apoplastic effectors secreted by two unrelated eukaryotic plant pathogens target the tomato defense protease Rcr3

(2009) J. Song et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Specific ER quality control components required for biogenesis of the plant innate immune receptor EFR

(2009) J. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

Fungal Effector Protein AVR2 Targets Diversifying Defense-Related Cys Proteases of Tomato

(2008) M. Shabab et al.   PLANT CELL