SIGNOR 3.0, the SIGnaling network open resource 3.0: 2022 update

A Resource to Infer Molecular Paths Linking Cancer Mutations to Perturbation of Cell Metabolism

(2022) Marta Iannuccelli et al.   Frontiers in Molecular Biosciences

Integrated intra‐ and intercellular signaling knowledge for multicellular omics analysis

(2021) Dénes Türei et al.   Molecular Systems Biology

A Resource for the Network Representation of Cell Perturbations Caused by SARS-CoV-2 Infection

(2021) Livia Perfetto et al.   Genes

ExTRI: Extraction of transcription regulation interactions from literature

(2021) Miguel Vazquez et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

SignaLink3: a multi-layered resource to uncover tissue-specific signaling networks

(2021) Luca Csabai et al.   NUCLEIC ACIDS RESEARCH

The IntAct database: efficient access to fine-grained molecular interaction data

(2021) Noemi del Toro et al.   NUCLEIC ACIDS RESEARCH

The reactome pathway knowledgebase 2022

(2021) Marc Gillespie et al.   NUCLEIC ACIDS RESEARCH

The BioGRID database: A comprehensive biomedical resource of curated protein, genetic and chemical interactions

(2020) Rose Oughtred et al.   PROTEIN SCIENCE

Gene regulation by long non-coding RNAs and its biological functions

(2020) Luisa Statello et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

The STRING database in 2021: customizable protein–protein networks, and functional characterization of user-uploaded gene/measurement sets

(2020) Damian Szklarczyk et al.   NUCLEIC ACIDS RESEARCH

Myo-REG: A Portal for Signaling Interactions in Muscle Regeneration

(2019) Alessandro Palma et al.   Frontiers in Physiology

CancerGeneNet: linking driver genes to cancer hallmarks

(2019) Marta Iannuccelli et al.   NUCLEIC ACIDS RESEARCH

Reconstruction of Cell-type-Specific Interactomes at Single-Cell Resolution

(2019) Shahin Mohammadi et al.   Cell Systems

MatrixDB: integration of new data with a focus on glycosaminoglycan interactions

(2018) Olivier Clerc et al.   NUCLEIC ACIDS RESEARCH

DISNOR: a disease network open resource

(2017) Prisca Lo Surdo et al.   NUCLEIC ACIDS RESEARCH

OmniPath: guidelines and gateway for literature-curated signaling pathway resources

(2016) Dénes Türei et al.   NATURE METHODS

The FAIR Guiding Principles for scientific data management and stewardship

(2016) Mark D. Wilkinson et al.   Scientific Data

IntOGen-mutations identifies cancer drivers across tumor types

(2013) Abel Gonzalez-Perez et al.   NATURE METHODS

MINT, the molecular interaction database: 2012 update

(2011) Luana Licata et al.   NUCLEIC ACIDS RESEARCH

Discrete logic modelling as a means to link protein signalling networks with functional analysis of mammalian signal transduction

(2009) Julio Saez-Rodriguez et al.   Molecular Systems Biology

Applying mass spectrometry-based proteomics to genetics, genomics and network biology

(2009) Matthias Gstaiger et al.   NATURE REVIEWS GENETICS