Multi-omic single-cell velocity models epigenome–transcriptome interactions and improves cell fate prediction
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Title
Multi-omic single-cell velocity models epigenome–transcriptome interactions and improves cell fate prediction
Authors
Keywords
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Journal
NATURE BIOTECHNOLOGY
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-10-14
DOI
10.1038/s41587-022-01476-y
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Note: Only part of the references are listed.- Stochastic models of nucleosome dynamics reveal regulatory rules of stimulus-induced epigenome remodeling
- (2022) Jinsu Kim et al. Cell Reports
- Integrated analysis of multimodal single-cell data
- (2021) Yuhan Hao et al. CELL
- Chromatin and gene-regulatory dynamics of the developing human cerebral cortex at single-cell resolution
- (2021) Alexandro E. Trevino et al. CELL
- RNA velocity—current challenges and future perspectives
- (2021) Volker Bergen et al. Molecular Systems Biology
- Chromatin Velocity reveals epigenetic dynamics by single-cell profiling of heterochromatin and euchromatin
- (2021) Martina Tedesco et al. NATURE BIOTECHNOLOGY
- Single-cell chromatin state analysis with Signac
- (2021) Tim Stuart et al. NATURE METHODS
- Representation learning of RNA velocity reveals robust cell transitions
- (2021) Chen Qiao et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Identification of region-specific astrocyte subtypes at single cell resolution
- (2020) Mykhailo Y. Batiuk et al. Nature Communications
- Generalizing RNA velocity to transient cell states through dynamical modeling
- (2020) Volker Bergen et al. NATURE BIOTECHNOLOGY
- Chromatin Potential Identified by Shared Single-Cell Profiling of RNA and Chromatin
- (2020) Sai Ma et al. CELL
- Integrative Single-Cell RNA-Seq and ATAC-Seq Analysis of Human Developmental Hematopoiesis
- (2020) Anna Maria Ranzoni et al. Cell Stem Cell
- Chromatin accessibility and the regulatory epigenome
- (2019) Sandy L. Klemm et al. NATURE REVIEWS GENETICS
- Multimodal Single-Cell Analysis Reveals Physiological Maturation in the Developing Human Neocortex
- (2019) Simone Mayer et al. NEURON
- Characterization of cell fate probabilities in single-cell data with Palantir
- (2019) Manu Setty et al. NATURE BIOTECHNOLOGY
- The single-cell transcriptional landscape of mammalian organogenesis
- (2019) Junyue Cao et al. NATURE
- Optimal-Transport Analysis of Single-Cell Gene Expression Identifies Developmental Trajectories in Reprogramming
- (2019) Geoffrey Schiebinger et al. CELL
- Comprehensive Integration of Single-Cell Data
- (2019) Tim Stuart et al. CELL
- Single-Cell Multi-omic Integration Compares and Contrasts Features of Brain Cell Identity
- (2019) Joshua D. Welch et al. CELL
- A Single-Cell Transcriptomic Atlas of Human Neocortical Development during Mid-gestation
- (2019) Damon Polioudakis et al. NEURON
- A comprehensive single cell transcriptional landscape of human hematopoietic progenitors
- (2019) Danilo Pellin et al. Nature Communications
- High-throughput sequencing of the transcriptome and chromatin accessibility in the same cell
- (2019) Song Chen et al. NATURE BIOTECHNOLOGY
- Eomes and Brachyury control pluripotency exit and germ-layer segregation by changing the chromatin state
- (2019) Jelena Tosic et al. NATURE CELL BIOLOGY
- Slingshot: cell lineage and pseudotime inference for single-cell transcriptomics
- (2018) Kelly Street et al. BMC GENOMICS
- Integrated Single-Cell Analysis Maps the Continuous Regulatory Landscape of Human Hematopoietic Differentiation
- (2018) Jason D. Buenrostro et al. CELL
- Conserved properties of dentate gyrus neurogenesis across postnatal development revealed by single-cell RNA sequencing
- (2018) Hannah Hochgerner et al. NATURE NEUROSCIENCE
- A Translational Repression Complex in Developing Mammalian Neural Stem Cells that Regulates Neuronal Specification
- (2018) Siraj K. Zahr et al. NEURON
- A Single-Cell Atlas of In Vivo Mammalian Chromatin Accessibility
- (2018) Darren A. Cusanovich et al. CELL
- RNA velocity of single cells
- (2018) Gioele La Manno et al. NATURE
- Genomic encoding of transcriptional burst kinetics
- (2018) Anton J. M. Larsson et al. NATURE
- Single cell RNA-seq and ATAC-seq analysis of cardiac progenitor cell transition states and lineage settlement
- (2018) Guangshuai Jia et al. Nature Communications
- Isoform-Specific Expression and Feedback Regulation of E Protein TCF4 Control Dendritic Cell Lineage Specification
- (2017) Lucja T. Grajkowska et al. IMMUNITY
- Granulocyte-Monocyte Progenitors and Monocyte-Dendritic Cell Progenitors Independently Produce Functionally Distinct Monocytes
- (2017) Alberto Yáñez et al. IMMUNITY
- Integrative single-cell analysis of transcriptional and epigenetic states in the human adult brain
- (2017) Blue B Lake et al. NATURE BIOTECHNOLOGY
- chromVAR: inferring transcription-factor-associated accessibility from single-cell epigenomic data
- (2017) Alicia N Schep et al. NATURE METHODS
- Single-cell RNA-seq reveals new types of human blood dendritic cells, monocytes, and progenitors
- (2017) Alexandra-Chloé Villani et al. SCIENCE
- Emerging roles of transit-amplifying cells in tissue regeneration and cancer
- (2017) Bing Zhang et al. Wiley Interdisciplinary Reviews-Developmental Biology
- TSCAN: Pseudo-time reconstruction and evaluation in single-cell RNA-seq analysis
- (2016) Zhicheng Ji et al. NUCLEIC ACIDS RESEARCH
- Dissecting the multicellular ecosystem of metastatic melanoma by single-cell RNA-seq
- (2016) I. Tirosh et al. SCIENCE
- Transcriptional, epigenetic and retroviral signatures identify regulatory regions involved in hematopoietic lineage commitment
- (2016) Oriana Romano et al. Scientific Reports
- Molecular Identity of Human Outer Radial Glia during Cortical Development
- (2015) Alex A. Pollen et al. CELL
- Transcriptional Heterogeneity and Lineage Commitment in Myeloid Progenitors
- (2015) Franziska Paul et al. CELL
- Pbx Regulates Patterning of the Cerebral Cortex in Progenitors and Postmitotic Neurons
- (2015) Olga Golonzhka et al. NEURON
- Computing and Visualizing Dynamic Time Warping Alignments inR: ThedtwPackage
- (2015) Toni Giorgino Journal of Statistical Software
- Cortical and Clonal Contribution of Tbr2 Expressing Progenitors in the Developing Mouse Brain
- (2014) Navneet A. Vasistha et al. CEREBRAL CORTEX
- Chromatin state dynamics during blood formation
- (2014) D. Lara-Astiaso et al. SCIENCE
- Latent Enhancers Activated by Stimulation in Differentiated Cells
- (2013) Renato Ostuni et al. CELL
- Genome-wide approaches reveal EGR1-controlled regulatory networks associated with neurodegeneration
- (2013) Radosveta Koldamova et al. NEUROBIOLOGY OF DISEASE
- Revision of the Human Hematopoietic Tree: Granulocyte Subtypes Derive from Distinct Hematopoietic Lineages
- (2013) André Görgens et al. Cell Reports
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- A unique chromatin signature uncovers early developmental enhancers in humans
- (2010) Alvaro Rada-Iglesias et al. NATURE
- Neurogenic radial glia in the outer subventricular zone of human neocortex
- (2010) David V. Hansen et al. NATURE
- Inducible gene expression: diverse regulatory mechanisms
- (2010) Vikki M. Weake et al. NATURE REVIEWS GENETICS
- GOrilla: a tool for discovery and visualization of enriched GO terms in ranked gene lists
- (2009) Eran Eden et al. BMC BIOINFORMATICS
- Matching incomplete time series with dynamic time warping: an algorithm and an application to post-stroke rehabilitation
- (2008) Paolo Tormene et al. ARTIFICIAL INTELLIGENCE IN MEDICINE
- Hematopoiesis: An Evolving Paradigm for Stem Cell Biology
- (2008) Stuart H. Orkin et al. CELL
- The T-box transcription factor Eomes/Tbr2 regulates neurogenesis in the cortical subventricular zone
- (2008) S. J. Arnold et al. GENES & DEVELOPMENT
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