Shiga toxin-producing Escherichia coli clonal complex 32, including serotype O145:H28, in the UK and Ireland

Prevalence and epidemiology of non-O157 Escherichia coli serogroups O26, O103, O111, O145 and Shiga toxin gene carriage in Scottish cattle, 2014-2015.

(2021) Deborah V. Hoyle et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Genetic diversity and pathogenic potential of Shiga toxin-producing Escherichia coli (STEC) derived from German flour

(2021) Michaela Projahn et al.   INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

The emerging importance of Shiga toxin-producing Escherichia coli other than serogroup O157 in England

(2021) Bhavita Vishram et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Evaluation of chromogenic selective agar (CHROMagar STEC) for the direct detection of Shiga toxin-producing Escherichia coli from faecal specimens

(2020) Claire Jenkins et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Corrigendum to: IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Occurrence of ‘gang of five’ Shiga toxin‐producing Escherichia coli serogroups on Belgian dairy cattle farms by overshoe sampling

(2020) F. Engelen et al.   LETTERS IN APPLIED MICROBIOLOGY

Interactive Tree Of Life (iTOL) v4: recent updates and new developments

(2019) Ivica Letunic et al.   NUCLEIC ACIDS RESEARCH

Fast hierarchical Bayesian analysis of population structure

(2019) Gerry Tonkin-Hill et al.   NUCLEIC ACIDS RESEARCH

Analysis of virulence potential of Escherichia coli O145 isolated from cattle feces and hide samples based on whole genome sequencing

(2019) Pragathi B. Shridhar et al.   PLoS One

The EnteroBase user's guide, with case studies on Salmonella transmissions, Yersinia pestis phylogeny, and Escherichia core genomic diversity

(2019) Zhemin Zhou et al.   GENOME RESEARCH

Versatile genome assembly evaluation with QUAST-LG

(2018) Alla Mikheenko et al.   BIOINFORMATICS

SnapperDB: a database solution for routine sequencing analysis of bacterial isolates

(2018) Timothy Dallman et al.   BIOINFORMATICS

Evaluating next-generation sequencing for direct clinical diagnostics in diarrhoeal disease

(2017) K. G. Joensen et al.   EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES

Whole Genome Sequencing for Public Health Surveillance of Shiga Toxin-Producing Escherichia coli Other than Serogroup O157

(2016) Marie A. Chattaway et al.   Frontiers in Microbiology

MOST: a modified MLST typing tool based on short read sequencing

(2016) Rediat Tewolde et al.   PeerJ

The epidemiology, microbiology and clinical impact of Shiga toxin-producing Escherichia coli in England, 2009–2012

(2015) L. BYRNE et al.   EPIDEMIOLOGY AND INFECTION

Identification of verocytotoxin-producing Escherichia coli O117:H7 in men who have sex with men, England, November 2013 to August 2014

(2014) I Simms et al.   Eurosurveillance

Rapid phylogenetic analysis of large samples of recombinant bacterial whole genome sequences using Gubbins

(2014) Nicholas J. Croucher et al.   NUCLEIC ACIDS RESEARCH

Recent Advances in Understanding Enteric Pathogenic Escherichia coli

(2013) M. A. Croxen et al.   CLINICAL MICROBIOLOGY REVIEWS

Multistate Outbreak of Escherichia coli O145 Infections Associated with Romaine Lettuce Consumption, 2010

(2013) E. V. TAYLOR et al.   JOURNAL OF FOOD PROTECTION

Investigation of an Escherichia coli O145 outbreak in a child day-care centre - extensive sampling and characterization of eae- and stx 1-positive E. coli yields epidemiological and socioeconomic insight

(2011) Erik Wahl et al.   BMC INFECTIOUS DISEASES

Detection and identification of bacteria in clinical samples by 16S rRNA gene sequencing: comparison of two different approaches in clinical practice

(2011) C. Jenkins et al.   JOURNAL OF MEDICAL MICROBIOLOGY

Rates of Mutation and Host Transmission for an Escherichia coli Clone over 3 Years

(2011) Peter R. Reeves et al.   PLoS One

Virulence Profiling and Quantification of Verocytotoxin-Producing Escherichia coli O145:H28 and O26:H11 Isolated During an Ice Cream–Related Hemolytic Uremic Syndrome Outbreak

(2010) Glenn Buvens et al.   Foodborne Pathogens and Disease

Escherichia coli Shiga Toxin Mechanisms of Action in Renal Disease

(2010) Tom G. Obrig   Toxins