A cost‐effective tsCUT&Tag method for profiling transcription factor binding landscape

A survey on protein–DNA-binding sites in computational biology

(2022) Yue Zhang et al.   Briefings in Functional Genomics

Targeting a gene regulatory element enhances rice grain yield by decoupling panicle number and size

(2022) Xiaoguang Song et al.   NATURE BIOTECHNOLOGY

Transient ChIP-Seq for Genome-wide In Vivo DNA Binding Landscape

(2021) Guanqun Wang et al.   TRENDS IN PLANT SCIENCE

DeepGRN: prediction of transcription factor binding site across cell-types using attention-based deep neural networks

(2021) Chen Chen et al.   BMC BIOINFORMATICS

Rapid and Low-Input Profiling of Histone Marks in Plants Using Nucleus CUT&Tag

(2021) Weizhi Ouyang et al.   Frontiers in Plant Science

Profiling plant histone modification at single‐cell resolution using snCUT&Tag

(2021) Weizhi Ouyang et al.   PLANT BIOTECHNOLOGY JOURNAL

Transcription Factors and DNA Play Hide and Seek

(2020) David M. Suter   TRENDS IN CELL BIOLOGY

Efficient low-cost chromatin profiling with CUT&Tag

(2020) Hatice S. Kaya-Okur et al.   Nature Protocols

Efficient chromatin profiling of H3K4me3 modification in cotton using CUT&Tag

(2020) Xiaoyuan Tao et al.   Plant Methods

Reconstructing the maize leaf regulatory network using ChIP-seq data of 104 transcription factors

(2020) Xiaoyu Tu et al.   Nature Communications

Transcription factors and 3D genome conformation in cell-fate decisions

(2019) Ralph Stadhouders et al.   NATURE

Challenges of Translating Gene Regulatory Information into Agronomic Improvements

(2019) Nathan Springer et al.   TRENDS IN PLANT SCIENCE

CUT&Tag for efficient epigenomic profiling of small samples and single cells

(2019) Hatice S. Kaya-Okur et al.   Nature Communications

The regulatory landscape of a core maize domestication module controlling bud dormancy and growth repression

(2019) Zhaobin Dong et al.   Nature Communications

Identification of cis -regulatory elements by chromatin structure

(2018) Zefu Lu et al.   CURRENT OPINION IN PLANT BIOLOGY

A single transcription factor promotes both yield and immunity in rice

(2018) Jing Wang et al.   SCIENCE

The DNA binding landscape of the maize AUXIN RESPONSE FACTOR family

(2018) Mary Galli et al.   Nature Communications

Mapping genome-wide transcription-factor binding sites using DAP-seq

(2017) Anna Bartlett et al.   Nature Protocols

A fast, efficient chromatin immunoprecipitation method for studying protein-DNA binding in Arabidopsis mesophyll protoplasts

(2017) Jeong Hwan Lee et al.   Plant Methods

Transposition of native chromatin for fast and sensitive epigenomic profiling of open chromatin, DNA-binding proteins and nucleosome position

(2013) Jason D Buenrostro et al.   NATURE METHODS

Genome-Wide Binding Analysis of the Transcription Activator IDEAL PLANT ARCHITECTURE1 Reveals a Complex Network Regulating Rice Plant Architecture

(2013) Z. Lu et al.   PLANT CELL