Article
Cell Biology
Kia Wee Tan, Viola Nahse, Coen Campsteijn, Andreas Brech, Kay Oliver Schink, Harald Stenmark
Summary: The study identifies JIP4 and Phafin2 as crucial components in the recycling pathway from macropinosomes, with their interaction and impact on PtdIns3P affecting the retention and processing of internalized cargoes in cells.
JOURNAL OF CELL SCIENCE
(2021)
Article
Cell Biology
Katherine M. Paine, Gabrielle B. Ecclestone, Chris MacDonald
Summary: Using yeast as a model, this study investigated the functions and regulatory mechanisms of cell surface membrane proteins, identifying gene mutations related to growth in limited uracil media, with particular focus on the roles of these variants in membrane trafficking and transcription functions.
Article
Biochemistry & Molecular Biology
Navin Gopaldass, Maria Giovanna De Leo, Thibault Courtellemont, Vincent Mercier, Christin Bissig, Aurelien Roux, Andreas Mayer
Summary: Proteins exit from endosomes through retromer-coated tubular carriers, which affects cellular signaling, lysosomal biogenesis, and various diseases. The coat formation requires overcoming membrane tension. In this study, we investigated the dynamics and driving force of this process using yeast retromer, BAR-domain sorting nexins Vps5 and Vps17, and synthetic lipid tubules. The results showed that the coat forms a static tubular structure by bidirectional oligomerization, and high concentrations of sorting nexins constrict the membrane tubes. However, retromer oligomers are needed to drive constriction at lower concentrations.
Article
Biochemistry & Molecular Biology
Jie Jia, Xihua Yue, Lianhui Zhu, Shuaiyang Jing, Yijing Wang, Bopil Gim, Yi Qian, Intaek Lee
Summary: The KDEL receptor undergoes a complex recycling pathway through Golgi and perinuclear recycling endosomes when expressed on the cell surface, preferring clathrin-mediated endocytic pathway and transport carriers. This suggests that the KDEL receptor may function as a bona fide cell surface receptor with a well-defined trafficking itinerary through endolysosomal compartments.
CELLULAR AND MOLECULAR LIFE SCIENCES
(2021)
Article
Neurosciences
Guillermo Moya-Alvarado, Miguel V. Guerra, Reynaldo Tiburcio, Evelyn Bravo, Francisca C. Bronfman
Summary: This article reviews the mechanisms of intracellular transport and signaling in neurons, focusing on the roles of Rab11-recycling endosomes and the BDNF/TrkB signaling pathway in neuronal plasticity. It also highlights the detrimental effects of dysfunction in the early-recycling pathway on BDNF signaling.
NEUROBIOLOGY OF DISEASE
(2022)
Article
Neurosciences
Sisi Yang, Daehun Park, Laura Manning, Sarah E. Hill, Mian Cao, Zhao Xuan, Ian Gonzalez, Yongming Dong, Benjamin Clark, Lin Shao, Ifechukwu Okeke, Agustin Almoril-Porras, Jihong Bai, Pietro De Camilli, Daniel A. Colon-Ramos
Summary: This study reveals the regulated key steps of ATG-9 trafficking at presynaptic sites and provides evidence that ATG-9 exo-endocytosis couples autophagosome biogenesis at presynaptic sites with the activity-dependent synaptic vesicle cycle.
Review
Cell Biology
Sara Sigismund, Letizia Lanzetti, Giorgio Scita, Pier Paolo Di Fiore
Summary: Endocytosis, beyond its canonical function of molecule internalization, plays a crucial role in regulating cell signalling spatiotemporally. It controls various cellular processes, including cell migration and polarity, with its deregulation being implicated in diseases like cancer. Recent studies have shown that endocytosis and subsequent trafficking routes have a significant impact on signal transmission regulation, affecting cell physiology and pathology.
NATURE REVIEWS MOLECULAR CELL BIOLOGY
(2021)
Article
Cell Biology
Francisco Pina, Bing Yan, Junjie Hu, Maho Niwa
Summary: The study reveals that reticulon 1 (Rtn1) and Yop1, known as ER-curvature-generating proteins, bind to sphingolipid phytosphingosine (PHS) to block the inheritance of endoplasmic reticulum (ER). This mechanism is conserved in human cells.
Article
Cell Biology
Yilei Ma, Ru Zhao, Hui Guo, Qingchao Tong, Wallace Y. Langdon, Weiwei Liu, Jun Zhang, Jian Zhang
Summary: In this study, E-Syt1 was identified as a key regulator of Casp-11 oligomerization and activation. Macrophages lacking E-Syt1 showed reduced production of IL-1b and impaired pyroptosis. E-Syt1 underwent oligomerization and interacted with Casp-11 to facilitate its activation.
Article
Multidisciplinary Sciences
Maika S. Deffieu, Ieva Cesonyte, Francois Delalande, Gaelle Boncompain, Cristina Dorobantu, Eli Song, Vincent Lucansky, Aurelie Hirschler, Sarah Cianferani, Franck Perez, Christine Carapito, Raphael Gaudin
Summary: The study combined RUSH and eRUSH methods and identified Rab7-harboring vesicles as important intermediates in the Golgi-to-plasma membrane transport of TfR. Rab7 was found to transiently associate with neosynthetic TfR-containing post-Golgi vesicles before dissociation before fusion with the plasma membrane, revealing the diversity of secretory vesicles.
Article
Biochemistry & Molecular Biology
Ryan Keable, Shangfeng Hu, Grant Pfundstein, Irina Kozlova, Feifei Su, Ximing Du, Hongyuan Yang, Jenny Gunnersen, Melitta Schachner, Iryna Leshchyns'ka, Vladimir Sytnyk
Summary: The association between NCAM2 and BACE1 promotes the targeting of BACE1 to endosomes, thereby regulating its activity.
CELLULAR AND MOLECULAR LIFE SCIENCES
(2022)
Review
Cell Biology
Kelsie A. Leary, Michael J. Ragusa
Summary: This article reviews the methods used to investigate membrane binding by the core autophagy machinery and accessory proteins involved in autophagy in yeast. It also summarizes key experiments demonstrating how each autophagy protein interacts with membranes.
Article
Cell Biology
Qixin Chen, Mingang Hao, Lei Wang, Linsen Li, Yang Chen, Xintian Shao, Zhiqi Tian, Richard A. Pfuetzner, Qing Zhong, Axel T. Brunger, Jun-Lin Guan, Jiajie Diao
Summary: The study revealed that lysosomes cluster around autophagosomes upon stimulation, setting the stage for membrane fusion, with the SNARE protein VAMP8 playing a crucial role in this prefusion state. Phosphorylation of VAMP8 was found to reduce spontaneous fusion under normal conditions while preassembling multiple lysosomes to increase fusion probability upon stimulation, impacting autophagosome maturation and chemotherapy drug resistance.
CELL DEATH & DISEASE
(2021)
Review
Biotechnology & Applied Microbiology
Aravind Madhavan, K. B. Arun, Raveendran Sindhu, Jayaram Krishnamoorthy, R. Reshmy, Ranjna Sirohi, Arivalagan Pugazhendi, Mukesh Kumar Awasthi, George Szakacs, Parameswaran Binod
Summary: Manufacture of recombinant therapeutics is a rapidly growing field in pharmaceuticals, with yeasts being established as important hosts for producing heterologous proteins. Advances in yeast gene manipulation tools and techniques have enabled customization of yeast cells for therapeutic protein synthesis, utilizing strategies such as secretory pathway engineering and glycosylation engineering.
MICROBIAL CELL FACTORIES
(2021)
Article
Multidisciplinary Sciences
Naomi Matsumoto, Mizuki Sekiya, Ge-Hong Sun-Wada, Yoh Wada, Mayumi Nakanishi-Matsui
Summary: This study reveals that the lysosomal a3 isoform of V-ATPase interacts with the Mon1A-Ccz1 complex, which functions as a guanine nucleotide exchange factor for Rab7. The recruitment of a3 is mediated by the amino-terminal half domain of a3 and the longin motifs of Mon1A and Ccz1. The presence of a3 in lysosomes is crucial for the localization of Mon1A-Ccz1 to secretory lysosomes and the recruitment of Rab7.
SCIENTIFIC REPORTS
(2022)
Article
Cell Biology
Chris MacDonald, Robert C. Piper
JOURNAL OF CELL BIOLOGY
(2017)
Review
Biochemistry & Molecular Biology
Kamilla M. E. Laidlaw, Chris MacDonald
BIOCHEMICAL SOCIETY TRANSACTIONS
(2018)
Article
Biochemistry & Molecular Biology
Chris MacDonald, S. Brookhart Shields, Charlotte A. Williams, Stanley Winistorfer, Robert C. Piper
Article
Cell Biology
Kamilla M. E. Laidlaw, Daniel D. Bisinski, Sviatlana Shashkova, Katherine M. Paine, Malaury A. Veillon, Mark C. Leake, Chris MacDonald
Summary: Eukaryotic cells adjust their metabolism in response to extracellular environment, with downregulation of surface cargo proteins under nutrient stress to enhance nutrient uptake. Glucose starvation triggers various transcriptional responses, including increased internalization and nutrient transport, enabling cells to persist and maximize nutrient uptake during starvation.
JOURNAL OF CELL SCIENCE
(2021)
Article
Biochemical Research Methods
Jack W. Shepherd, Sarah Lecinski, Jasmine Wragg, Sviatlana Shashkova, Chris MacDonald, Mark C. Leake
Summary: This study used cutting-edge genomically integrated FRET biosensing to determine localized molecular crowding in single live yeast cells, finding that crowding is reduced when yeast is grown in elevated glucose concentrations. Simulations indicated that the cell membrane is largely inaccessible to these sensors, and that cytosolic crowding is broadly uniform across each cell over a timescale of seconds.
Article
Cell Biology
Katherine M. Paine, Gabrielle B. Ecclestone, Chris MacDonald
Summary: Using yeast as a model, this study investigated the functions and regulatory mechanisms of cell surface membrane proteins, identifying gene mutations related to growth in limited uracil media, with particular focus on the roles of these variants in membrane trafficking and transcription functions.
Article
Biochemistry & Molecular Biology
Konstantina Amoiradaki, Kate R. Bunting, Katherine M. Paine, Josephine E. Ayre, Karen Hogg, Kamilla M. E. Laidlaw, Chris MacDonald
Summary: The study shows that multiple subunits of the Rpd3 lysine deacetylase complex play a crucial role in the recycling of surface proteins, with potential downstream target genes identified through validation and bioinformatics analysis. This suggests that recycling is controlled by Rpd3 at the transcriptional level through multiple downstream target genes.
INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES
(2021)
Article
Cell Biology
Kamilla M. E. Laidlaw, Katherine M. Paine, Daniel D. Bisinski, Grant Calder, Karen Hogg, Sophia Ahmed, Sally James, Peter J. O'Toole, Chris MacDonald
Summary: Cell surface protein trafficking is regulated in response to nutrient availability. Recycling of internalized protein and lipid cargoes is attenuated during glucose starvation, potentially due to changes in endosomal PI3K activity and the involvement of Gpa2.
MOLECULAR BIOLOGY OF THE CELL
(2022)
Article
Multidisciplinary Sciences
Ilya Andreev, Kamilla M. E. Laidlaw, Simone M. Giovanetti, Guillaume Urtecho, Daniel Shriner, Joshua S. Bloom, Chris MacDonald, Meru J. Sadhu
Summary: Secreted protein toxins play important roles in conflicts between organisms. Understanding how organisms genetically adapt to defend themselves against these toxins is crucial for understanding the coevolutionary dynamics of competing organisms. This study discovered a novel defense factor, KTD1, which is critical in resisting the killer toxin K28.
PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
(2023)
Article
Biology
Sarah Lecinski, Jack W. Shepherd, Kate Bunting, Lara Dresser, Steven D. Quinn, Chris MacDonald, Mark C. Leake
Summary: In this study, we explore the diffusion and molecular crowding characteristics of molecular crowding agents using super-resolved fluorescence microscopy and ensemble time-resolved spectroscopy. We first characterize them in vitro and then apply the insights to live cells. We also propose a method to internalize fluorescent beads as viscoelasticity markers in the cytoplasm of live yeast cells.
Review
Biochemistry & Molecular Biology
Kamilla M. E. Laidlaw, Rachel Livingstone, Mohammed Al-Tobi, Nia J. Bryant, Gwyn W. Gould
BIOCHEMICAL SOCIETY TRANSACTIONS
(2017)