Microbiome of Nodules and Roots of Soybean and Common Bean: Searching for Differences Associated with Contrasting Performances in Symbiotic Nitrogen Fixation

Microbiome profiling reveals that Pseudomonas antagonise parasitic nodule colonisation of cheater rhizobia in Lotus

(2022) Duncan B. Crosbie et al.   NEW PHYTOLOGIST

Quantifying country-to-global scale nitrogen fixation for grain legumes II. Coefficients, templates and estimates for soybean, groundnut and pulses

(2022) David F. Herridge et al.   PLANT AND SOIL

So many rhizobial partners, so little nitrogen fixed: The intriguing symbiotic promiscuity of common bean (Phaseolus vulgaris L.)

(2022) Fernanda Terezinha Moura et al.   SYMBIOSIS

Profound Change in Soil Microbial Assembly Process and Co-occurrence Pattern in Co-inoculation of Bradyrhizobium japonicum 5038 and Bacillus aryabhattai MB35-5 on Soybean

(2022) Yubin Zhao et al.   Frontiers in Microbiology

Rhizosphere Signaling: Insights into Plant–Rhizomicrobiome Interactions for Sustainable Agronomy

(2022) Fatima Jamil et al.   Microorganisms

Modulation of Maize Rhizosphere Microbiota Composition by Inoculation with Azospirillum argentinense Az39 (Formerly A. brasilense Az39)

(2022) Anahí Coniglio et al.   Journal of Soil Science and Plant Nutrition

All Set before Flowering: A 16S Gene Amplicon-Based Analysis of the Root Microbiome Recruited by Common Bean (Phaseolus vulgaris) in Its Centre of Domestication

(2022) Francisco Medina-Paz et al.   Plants-Basel

Soybean Root Nodule and Rhizosphere Microbiome: Distribution of Rhizobial and Non-rhizobial Endophytes

(2021) Parris Mayhood et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Groundnut (Arachis hypogaea) nodule Rhizobium and passenger endophytic bacterial cultivable diversity and their impact on plant growth promotion

(2021) R. Preyanga et al.   Rhizosphere

Persistent microbiome members in the common bean rhizosphere: an integrated analysis of space, time, and plant genotype

(2021) Nejc Stopnisek et al.   ISME Journal

Perspectives for sustainable agriculture from the microbiome in plant rhizosphere

(2021) Blessing Chidinma Nwachukwu et al.   Plant Biotechnology Reports

Genetic characterization at the species and symbiovar level of indigenous rhizobial isolates nodulating Phaseolus vulgaris in Greece

(2021) Evdoxia Efstathiadou et al.   Scientific Reports

Meta-analysis reveals benefits of co-inoculation of soybean with Azospirillum brasilense and Bradyrhizobium spp. in Brazil

(2021) Julierme Zimmer Barbosa et al.   APPLIED SOIL ECOLOGY

Bacillus amyloliquefaciens FH-1 significantly affects cucumber seedlings and the rhizosphere bacterial community but not soil

(2021) Jingjing Wang et al.   Scientific Reports

Competition, Nodule Occupancy, and Persistence of Inoculant Strains: Key Factors in the Rhizobium-Legume Symbioses

(2021) Marcela Mendoza-Suárez et al.   Frontiers in Plant Science

Legume–rhizobium dance: an agricultural tool that could be improved?

(2021) Laura A. Basile et al.   Microbial Biotechnology

Quantifying country-to-global scale nitrogen fixation for grain legumes: I. Reliance on nitrogen fixation of soybean, groundnut and pulses

(2021) Mark B. Peoples et al.   PLANT AND SOIL

Seed-Transmitted Bacteria and Fungi Dominate Juvenile Plant Microbiomes

(2021) David Johnston-Monje et al.   Frontiers in Microbiology

Plant microbiome analysis after Metarhizium amendment reveals increases in abundance of plant growth-promoting organisms and maintenance of disease-suppressive soil

(2020) Larissa Barelli et al.   PLoS One

Plant Microbiome Engineering: Expected Benefits for Improved Crop Growth and Resilience

(2020) Inessa Arif et al.   TRENDS IN BIOTECHNOLOGY

Seed pre‐inoculation with Bradyrhizobium as time‐optimizing option for large‐scale soybean cropping systems

(2020) Mariangela Hungria et al.   AGRONOMY JOURNAL

Nodule microbiome from cowpea and lima bean grown in composted tannery sludge-treated soil

(2020) Sandra Mara Barbosa Rocha et al.   APPLIED SOIL ECOLOGY

Genetic diversity of Agrobacterium species isolated from nodules of common bean and soybean in Brazil, Mexico, Ecuador and Mozambique, and description of the new species Agrobacterium fabacearum sp. nov.

(2020) Jakeline Renata Marçon Delamuta et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Highly diverse root endophyte bacterial community is driven by growth substrate and is plant genotype-independent in common bean (Phaseolus vulgaris L.)

(2020) Aarón Barraza et al.   PeerJ

Biochemical and molecular investigation of non-rhizobial endophytic bacteria as potential biofertilisers

(2020) Marzieh Bakhtiyarifar et al.   ARCHIVES OF MICROBIOLOGY

A review on the plant microbiome: Ecology, functions, and emerging trends in microbial application

(2019) Stéphane Compant et al.   Journal of Advanced Research

Unprecedented bacterial community richness in soybean nodules vary with cultivar and water status

(2019) Hazem Sharaf et al.   Microbiome

Interactions between plants and soil shaping the root microbiome under abiotic stress

(2019) Kyle Hartman et al.   BIOCHEMICAL JOURNAL

Illumina sequencing of 16S rRNA tag shows disparity in rhizobial and non-rhizobial diversity associated with root nodules of mung bean (Vigna radiata L.) growing in different habitats in Pakistan

(2019) Sughra Hakim et al.   MICROBIOLOGICAL RESEARCH

Antagonistic endophytic bacteria associated with nodules of soybean ( Glycine max L.) and plant growth-promoting properties

(2018) LongFei Zhao et al.   BRAZILIAN JOURNAL OF MICROBIOLOGY

Effects of the biocontrol agent Bacillus amyloliquefaciens SN16-1 on the rhizosphere bacterial community and growth of tomato

(2018) Tingting Wan et al.   JOURNAL OF PHYTOPATHOLOGY

Microbiome engineering to improve biocontrol and plant growth-promoting mechanisms

(2018) Ma del Carmen Orozco-Mosqueda et al.   MICROBIOLOGICAL RESEARCH

Emerging microbial biocontrol strategies for plant pathogens

(2018) Sharifah Farhana Syed Ab Rahman et al.   PLANT SCIENCE

Polyphasic characterization of rhizobia microsymbionts of common bean [Phaseolus vulgaris (L.)] isolated in Mato Grosso do Sul, a hotspot of Brazilian biodiversity

(2018) Maira Rejane Costa et al.   SYMBIOSIS

Two cultivated legume plants reveal the enrichment process of the microbiome in the rhizocompartments

(2017) Xiao Xiao et al.   MOLECULAR ECOLOGY

Cowpea Nodules Harbor Non-rhizobial Bacterial Communities that Are Shaped by Soil Type Rather than Plant Genotype

(2017) Jakson Leite et al.   Frontiers in Plant Science

Phytohormones and induction of plant-stress tolerance and defense genes by seed and foliar inoculation with Azospirillum brasilense cells and metabolites promote maize growth

(2017) Josiane Fukami et al.   AMB Express

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Integrated analysis of root microbiomes of soybean and wheat from agricultural fields

(2016) Nicolás Rascovan et al.   Scientific Reports

UpSet: Visualization of Intersecting Sets

(2014) Alexander Lex et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Plant growth promoting rhizobia: challenges and opportunities

(2014) Subramaniam Gopalakrishnan et al.   3 Biotech

Diversity of sporadic symbionts and nonsymbiotic endophytic bacteria isolated from nodules of woody, shrub, and food legumes in Ethiopia

(2013) Aregu Amsalu Aserse et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Co-inoculation of soybeans and common beans with rhizobia and azospirilla: strategies to improve sustainability

(2013) Mariangela Hungria et al.   BIOLOGY AND FERTILITY OF SOILS

Practical innovations for high-throughput amplicon sequencing

(2013) Derek S Lundberg et al.   NATURE METHODS

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Diversity and heritability of the maize rhizosphere microbiome under field conditions

(2013) J. A. Peiffer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Novel Rhizobium lineages isolated from root nodules of the common bean (Phaseolus vulgaris L.) in Andean and Mesoamerican areas

(2013) Renan Augusto Ribeiro et al.   RESEARCH IN MICROBIOLOGY

Revealing structure and assembly cues for Arabidopsis root-inhabiting bacterial microbiota

(2012) Davide Bulgarelli et al.   NATURE

Evaluation of general 16S ribosomal RNA gene PCR primers for classical and next-generation sequencing-based diversity studies

(2012) Anna Klindworth et al.   NUCLEIC ACIDS RESEARCH

Biodiversity and Biogeography of Rhizobia Associated with Soybean Plants Grown in the North China Plain

(2011) Yan Ming Zhang et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Polyphasic approach for the characterization of rhizobial symbionts effective in fixing N2 with common bean (Phaseolus vulgaris L.)

(2011) Juscélio Donizete Cardoso et al.   APPLIED MICROBIOLOGY AND BIOTECHNOLOGY

Estimation of the bacterial community diversity of soybean-nodulating bradyrhizobia isolated fromRj-genotype soybeans

(2010) Yuichi Saeki et al.   SOIL SCIENCE AND PLANT NUTRITION

Multilocus sequence analysis of Brazilian Rhizobium microsymbionts of common bean (Phaseolus vulgaris L.) reveals unexpected taxonomic diversity

(2009) Renan Augusto Ribeiro et al.   RESEARCH IN MICROBIOLOGY

Impact of inoculation with the phytostimulatory PGPR Azospirillum lipoferum CRT1 on the genetic structure of the rhizobacterial community of field-grown maize

(2008) Ezékiel Baudoin et al.   SOIL BIOLOGY & BIOCHEMISTRY