Geochemistry and microbiology of tropical serpentine soils in the Santa Elena Ophiolite, a landscape-biogeographical approach

Secondary aluminium, iron and silica phases across a volcanic soil climosequence, Galápagos Islands

(2019) T. Taboada et al.   EUROPEAN JOURNAL OF SOIL SCIENCE

Host effects in high ectomycorrhizal diversity tropical rainforests on ultramafic soils in New Caledonia

(2019) Fabian Carriconde et al.   Fungal Ecology

Manganese and cobalt redox cycling in laterites; Biogeochemical and bioprocessing implications

(2019) Laura Newsome et al.   CHEMICAL GEOLOGY

A global atlas of the dominant bacteria found in soil

(2018) Manuel Delgado-Baquerizo et al.   SCIENCE

Metagenomic insights into the microbial diversity in manganese-contaminated mine tailings and their role in biogeochemical cycling of manganese

(2018) Shreya Ghosh et al.   Scientific Reports

Bacterial communities in the rhizosphere of different populations of the Ni-hyperaccumulator Alyssum serpyllifolium and the metal-excluder Dactylis glomerata growing in ultramafic soils

(2018) M. Touceda-González et al.   PLANT AND SOIL

Changes in microbial communities and associated water and gas geochemistry across a sulfate gradient in coal beds: Powder River Basin, USA

(2018) Hannah Schweitzer et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

Nitrogen loss from anaerobic ammonium oxidation coupled to Iron(III) reduction in a riparian zone

(2017) Bangjing Ding et al.   ENVIRONMENTAL POLLUTION

Anaerobic and aerobic reductive dissolutions of iron-rich nickel laterite overburden by Acidithiobacillus

(2017) Jeannette Marrero et al.   HYDROMETALLURGY

Mycosphaerellaceae – Chaos or clarity?

(2017) S.I.R. Videira et al.   STUDIES IN MYCOLOGY

Methane Dynamics in a Tropical Serpentinizing Environment: The Santa Elena Ophiolite, Costa Rica

(2017) Melitza Crespo-Medina et al.   Frontiers in Microbiology

Accurate Estimation of Fungal Diversity and Abundance through Improved Lineage-Specific Primers Optimized for Illumina Amplicon Sequencing

(2016) D. Lee Taylor et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Chemical weathering in the volcanic soils of Isla Santa Cruz (Galápagos Islands, Ecuador)

(2016) Teresa Taboada et al.   GEODERMA

Sulfur and carbon geochemistry of the Santa Elena peridotites: Comparing oceanic and continental processes during peridotite alteration

(2016) Esther M. Schwarzenbach et al.   LITHOS

Origin of plagiogranites in oceanic complexes: A case study of the Nicoya and Santa Elena terranes, Costa Rica

(2016) Scott A. Whattam et al.   LITHOS

Manganese and iron release from mangrove porewaters: A significant component of oceanic budgets?

(2016) Ceylena J. Holloway et al.   MARINE CHEMISTRY

Distribution patterns of microbial communities in ultramafic landscape: a metagenetic approach highlights the strong relationships between diversity and environmental traits

(2016) L. Bordez et al.   MOLECULAR ECOLOGY

Trace metal geochemistry in mangrove sediments and their transfer to mangrove plants (New Caledonia)

(2016) C. Marchand et al.   SCIENCE OF THE TOTAL ENVIRONMENT

Environmental and Geographical Factors Structure Soil Microbial Diversity in New Caledonian Ultramafic Substrates: A Metagenomic Approach

(2016) Véronique Gourmelon et al.   PLoS One

Microbial Iron Oxidation in the Arctic Tundra and Its Implications for Biogeochemical Cycling

(2015) David Emerson et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Landscape Position Influences Microbial Composition and Function via Redistribution of Soil Water across a Watershed

(2015) Zhe Du et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Metal concentration and antioxidant activity of edible mushrooms from Turkey

(2015) Cengiz Sarikurkcu et al.   FOOD CHEMISTRY

Ni cycling in mangrove sediments from New Caledonia

(2015) Vincent Noël et al.   GEOCHIMICA ET COSMOCHIMICA ACTA

A melt-focusing zone in the lithospheric mantle preserved in the Santa Elena Ophiolite, Costa Rica

(2015) Pilar Madrigal et al.   LITHOS

Biomining in reverse gear: Using bacteria to extract metals from oxidised ores

(2015) D. Barrie Johnson et al.   MINERALS ENGINEERING

Coupling of diversification and pH adaptation during the evolution of terrestrial Thaumarchaeota

(2015) Cécile Gubry-Rangin et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

PIPITS: an automated pipeline for analyses of fungal internal transcribed spacer sequences from the Illumina sequencing platform

(2015) Hyun S. Gweon et al.   Methods in Ecology and Evolution

Cercosporoid fungi (Mycosphaerellaceae) 3. Species on monocots (Poaceae, true grasses)

(2015) Uwe Braun et al.   IMA Fungus

Comparative genomics highlights the unique biology of Methanomassiliicoccales, a Thermoplasmatales-related seventh order of methanogenic archaea that encodes pyrrolysine

(2014) Guillaume Borrel et al.   BMC GENOMICS

Geochemical evidence for active tropical serpentinization in the Santa Elena Ophiolite, Costa Rica: An analog of a humid early Earth?

(2014) Ricardo Sánchez-Murillo et al.   GEOCHEMISTRY GEOPHYSICS GEOSYSTEMS

Early stages of soil development on serpentinite: the proglacial area of the Verra Grande Glacier, Western Italian Alps

(2014) Michele E. D’Amico et al.   JOURNAL OF SOILS AND SEDIMENTS

Oxalate production by fungi: significance in geomycology, biodeterioration and bioremediation

(2014) Geoffrey Michael Gadd et al.   Fungal Biology Reviews

Development of a Dual-Index Sequencing Strategy and Curation Pipeline for Analyzing Amplicon Sequence Data on the MiSeq Illumina Sequencing Platform

(2013) James J. Kozich et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Nickel Laterite Ore Deposits: Weathered Serpentinites

(2013) C. R. M. Butt et al.   Elements

Assembling Single-Cell Genomes and Mini-Metagenomes From Chimeric MDA Products

(2013) Sergey Nurk et al.   JOURNAL OF COMPUTATIONAL BIOLOGY

UPARSE: highly accurate OTU sequences from microbial amplicon reads

(2013) Robert C Edgar   NATURE METHODS

Population Structure of Manganese-Oxidizing Bacteria in Stratified Soils and Properties of Manganese Oxide Aggregates under Manganese–Complex Medium Enrichment

(2013) Weihong Yang et al.   PLoS One

Trace metal biogeochemistry in mangrove ecosystems: A comparative assessment of acidified (by acid sulfate soils) and non-acidified sites

(2013) Bibhash Nath et al.   SCIENCE OF THE TOTAL ENVIRONMENT

PANDAseq: paired-end assembler for illumina sequences

(2012) Andre P Masella et al.   BMC BIOINFORMATICS

The partitioning of transitional metals (Fe, Mn, Ni, Cr) in mangrove sediments downstream of a ferralitized ultramafic watershed (New Caledonia)

(2012) C. Marchand et al.   CHEMICAL GEOLOGY

Assessment of trace metal contamination in mangrove ecosystems from Senegal, West Africa

(2012) N. Bodin et al.   CHEMOSPHERE

Heavy metal accumulation in mangrove sediments surrounding a large waste reservoir of a local metallurgical plant, Sepetiba Bay, SE, Brazil

(2012) E. F. Fonseca et al.   Environmental Earth Sciences

Climate change and the formation of nickel laterite deposits

(2012) Robert L. Thorne et al.   GEOLOGY

Ultra-high-throughput microbial community analysis on the Illumina HiSeq and MiSeq platforms

(2012) J Gregory Caporaso et al.   ISME Journal

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

The influence of sampling strategies and spatial variation on the detected soil bacterial communities under three different land-use types

(2011) Catherine A. Osborne et al.   FEMS MICROBIOLOGY ECOLOGY

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

(2011) B. J. Haas et al.   GENOME RESEARCH

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Reductive dissolution of ferric iron minerals: A new approach for bio-processing nickel laterites

(2010) Kevin B. Hallberg et al.   MINERALS ENGINEERING

QIIME allows analysis of high-throughput community sequencing data

(2010) J Gregory Caporaso et al.   NATURE METHODS

Serpentine Soils Do Not Limit Mycorrhizal Fungal Diversity

(2010) Sara Branco et al.   PLoS One

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Characteristic of Dystrustepts in the Venezuelan Andes

(2010) Guido Ochoa et al.   REVISTA BRASILEIRA DE CIENCIA DO SOLO

The Costa Rican Jurassic to Miocene oceanic complexes: Origin, tectonics and relations

(2009) Percy Denyer et al.   JOURNAL OF SOUTH AMERICAN EARTH SCIENCES

Bioaccumulation of gold in macrofungi and ectomycorrhizae from the vicinity of the Mokrsko gold deposit, Czech Republic

(2009) Jan Borovička et al.   SOIL BIOLOGY & BIOCHEMISTRY