Bone appétit: DNA metabarcoding as a non-lethal alternative to morphological dietary assessment in Atlantic bonefish (Albula vulpes)

Using recreational tournament records to construct a 53-year time series of the Florida Keys recreational Bonefish fishery

(2022) Ross E. Boucek et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Viruses of Atlantic Bonefish (Albula vulpes) in Florida and the Caribbean show geographic patterns consistent with population declines

(2022) Lewis J. Campbell et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Horseshoe crab genomes reveal the evolution of genes and microRNAs after three rounds of whole genome duplication

(2021) Wenyan Nong et al.   Communications Biology

Molecular diet analysis of neotropical bats based on fecal DNA metabarcoding

(2021) Melissa R. Ingala et al.   Ecology and Evolution

ggVennDiagram: An Intuitive, Easy-to-Use, and Highly Customizable R Package to Generate Venn Diagram

(2021) Chun-Hui Gao et al.   Frontiers in Genetics

Metabarcoding of stomach contents and fecal samples provide similar insights about Seaside Sparrow diet

(2021) Allison M Snider et al.   CONDOR

Snow Leopard Dietary Preferences and Livestock Predation Revealed by Fecal DNA Metabarcoding: No Evidence for Apparent Competition Between Wild and Domestic Prey

(2021) Qi Lu et al.   Frontiers in Ecology and Evolution

Lingering Taxonomic Challenges Hinder Conservation and Management of Global Bonefishes

(2020) Brandon D. Pickett et al.   FISHERIES

Comparing diversity levels in environmental samples: DNA sequence capture and metabarcoding approaches using 18S and COI genes

(2020) H Giebner et al.   Molecular Ecology Resources

18S rRNA metabarcoding diet analysis of a predatory fish community across seasonal changes in prey availability

(2019) Justin M. Waraniak et al.   Ecology and Evolution

Reconstructing hyperdiverse food webs: gut content metabarcoding as a tool to disentangle trophic interactions on coral reefs

(2019) J. M. Casey et al.   Methods in Ecology and Evolution

Advancing the integration of multi‐marker metabarcoding data in dietary analysis of trophic generalists

(2019) Luís P. da Silva et al.   Molecular Ecology Resources

COI metabarcoding primer choice affects richness and recovery of indicator taxa in freshwater systems

(2019) Mehrdad Hajibabaei et al.   PLoS One

Metabarcoding of eukaryotic parasite communities describes diverse parasite assemblages spanning the primate phylogeny

(2019) Jan F. Gogarten et al.   Molecular Ecology Resources

Counting with DNA in metabarcoding studies: How should we convert sequence reads to dietary data?

(2018) Bruce E. Deagle et al.   MOLECULAR ECOLOGY

Testing clustering strategies for metabarcoding-based investigation of community-environment interactions

(2018) Wei Xiong et al.   Molecular Ecology Resources

IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences

(2018) Adithya Murali et al.   Microbiome

How has the quality of bonefishing changed over the past 40 years? Using local ecological knowledge to quantitatively inform population declines in the South Florida flats fishery

(2018) J. S. Rehage et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Understanding the decline of catch-and-release fishery with angler knowledge: a key informant approach applied to South Florida bonefish

(2018) Emily K. N. Kroloff et al.   ENVIRONMENTAL BIOLOGY OF FISHES

A comparison of juvenile bonefish diets in Eleuthera, The Bahamas, and Florida, U.S.

(2018) Lucas P. Griffin et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Bonefish in South Florida: status, threats and research needs

(2018) Jacob W. Brownscombe et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Guidelines for evaluating the suitability of catch and release fisheries: Lessons learned from Caribbean flats fisheries

(2017) Aaron J. Adams   FISHERIES RESEARCH

DNA metabarcoding reveals diverse diet of the three-spined stickleback in a coastal ecosystem

(2017) Eglė Jakubavičiūtė et al.   PLoS One

Quantitative assessment of a data-limited recreational bonefish fishery using a time-series of fishing guides reports

(2017) Rolando O. Santos et al.   PLoS One

Diet Assessment Based on Rumen Contents: A Comparison between DNA Metabarcoding and Macroscopy

(2016) Ruth V. Nichols et al.   PLoS One

Advancing the science and management of flats fisheries for bonefish, tarpon, and permit

(2015) Aaron J. Adams et al.   ENVIRONMENTAL BIOLOGY OF FISHES

Comparison of potential diatom ‘barcode’ genes (the 18S rRNA gene and ITS, COI, rbcL) and their effectiveness in discriminating and determining species taxonomy in the Bacillariophyta

(2015) Liliang Guo et al.   INTERNATIONAL JOURNAL OF SYSTEMATIC AND EVOLUTIONARY MICROBIOLOGY

Taxonomic Resolutions Based on 18S rRNA Genes: A Case Study of Subclass Copepoda

(2015) Shu Wu et al.   PLoS One

Massively parallel multiplex DNA sequencing for specimen identification using an Illumina MiSeq platform

(2015) Shadi Shokralla et al.   Scientific Reports

Simultaneous assessment of the macrobiome and microbiome in a bulk sample of tropical arthropods through DNA metasystematics

(2014) J. Gibson et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Global conservation status and research needs for tarpons (Megalopidae), ladyfishes (Elopidae) and bonefishes (Albulidae)

(2013) Aaron J Adams et al.   FISH AND FISHERIES

Movement patterns of bonefish (Albula vulpes) in tidal creeks and coastal waters of Eleuthera, The Bahamas

(2013) Karen J. Murchie et al.   FISHERIES RESEARCH

Recovery bags reduce post-release impairments in locomotory activity and behavior of bonefish (Albula spp.) following exposure to angling-related stressors

(2013) Jacob W. Brownscombe et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Effect of pulsed gastric lavage on apparent survival of a juvenile fish in a natural system

(2012) Andrew B. Barbour et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

The SILVA ribosomal RNA gene database project: improved data processing and web-based tools

(2012) Christian Quast et al.   NUCLEIC ACIDS RESEARCH

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

Arctic Ocean Microbial Community Structure before and after the 2007 Record Sea Ice Minimum

(2011) André M. Comeau et al.   PLoS One

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

Diet of age-0 tarpon (Megalops atlanticus) in anthropogenically-modified and natural nursery habitats along the Indian River Lagoon, Florida

(2010) Zachary R. Jud et al.   ENVIRONMENTAL BIOLOGY OF FISHES