LaGomiCs—Lagomorph Genomics Consortium: An International Collaborative Effort for Sequencing the Genomes of an Entire Mammalian Order

Diversity, extinction, and threat status in Lagomorphs

(2015) Luis D. Verde Arregoitia et al.   ECOGRAPHY

The phylogeny of pikas (Ochotona) inferred from a multilocus coalescent approach

(2015) José Melo-Ferreira et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Assembly and diploid architecture of an individual human genome via single-molecule technologies

(2015) Matthew Pendleton et al.   NATURE METHODS

Rabbit models for the study of human atherosclerosis: From pathophysiological mechanisms to translational medicine

(2015) Jianglin Fan et al.   PHARMACOLOGY & THERAPEUTICS

The Genome 10K Project: A Way Forward

(2015) Klaus-Peter Koepfli et al.   Annual Review of Animal Biosciences

Expertly Validated Models and Phylogenetically-Controlled Analysis Suggests Responses to Climate Change Are Related to Species Traits in the Order Lagomorpha

(2015) Katie Leach et al.   PLoS One

The Elusive Nature of Adaptive Mitochondrial DNA Evolution of an Arctic Lineage Prone to Frequent Introgression

(2014) José Melo-Ferreira et al.   Genome Biology and Evolution

The hidden history of the snowshoe hare,Lepus americanus: extensive mitochondrial DNA introgression inferred from multilocus genetic variation

(2014) José Melo-Ferreira et al.   MOLECULAR ECOLOGY

Impact of high predation risk on genome-wide hippocampal gene expression in snowshoe hares

(2014) Sophia G. Lavergne et al.   OECOLOGIA

Snowshoe hares display limited phenotypic plasticity to mismatch in seasonal camouflage

(2014) M. Zimova et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Detection of the new emerging rabbit haemorrhagic disease type 2 virus (RHDV2) in Sicily from rabbit (Oryctolagus cuniculus) and Italian hare (Lepus corsicanus)

(2014) A. Camarda et al.   RESEARCH IN VETERINARY SCIENCE

Rabbit genome analysis reveals a polygenic basis for phenotypic change during domestication

(2014) M. Carneiro et al.   SCIENCE

Molecular evolution and antigenic variation of European brown hare syndrome virus (EBHSV)

(2014) Ana M. Lopes et al.   VIROLOGY

Effective gene targeting in rabbits using RNA-guided Cas9 nucleases

(2014) Dongshan Yang et al.   Journal of Molecular Cell Biology

The Genomic Architecture of Population Divergence between Subspecies of the European Rabbit

(2014) Miguel Carneiro et al.   PLoS Genetics

Novel genomic resources for a climate change sensitive mammal: characterization of the American pika transcriptome

(2013) Matthew A Lemay et al.   BMC GENOMICS

Home-loving boreal hare mitochondria survived several invasions in Iberia: the relative roles of recurrent hybridisation and allele surfing

(2013) J Melo-Ferreira et al.   HEREDITY

Taxonomic revision of pikas Ochotona (Lagomorpha, Mammalia) at the species level

(2013) Andrey A. Lissovsky   MAMMALIA

Steep clines within a highly permeable genome across a hybrid zone between two subspecies of the European rabbit

(2013) Miguel Carneiro et al.   MOLECULAR ECOLOGY

A large-scale evaluation of computational protein function prediction

(2013) Predrag Radivojac et al.   NATURE METHODS

Sequence assembly demystified

(2013) Niranjan Nagarajan et al.   NATURE REVIEWS GENETICS

Evolutionary History of Lagomorphs in Response to Global Environmental Change

(2013) Deyan Ge et al.   PLoS One

Camouflage mismatch in seasonal coat color due to decreased snow duration

(2013) L. S. Mills et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genomic responses in mouse models poorly mimic human inflammatory diseases

(2013) Junhee Seok et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

The Placental Mammal Ancestor and the Post-K-Pg Radiation of Placentals

(2013) M. A. O'Leary et al.   SCIENCE

High prevalence of paratuberculosis in rabbits is associated with difficulties in controlling the disease in cattle

(2013) L.J. Shaughnessy et al.   VETERINARY JOURNAL

Adaptive divergence along environmental gradients in a climate-change-sensitive mammal

(2013) P. Henry et al.   Ecology and Evolution

Reference-Free Population Genomics from Next-Generation Transcriptome Data and the Vertebrate–Invertebrate Gap

(2013) Philippe Gayral et al.   PLoS Genetics

Myxomatosis in Australia and Europe: A model for emerging infectious diseases

(2012) Peter J Kerr   ANTIVIRAL RESEARCH

Sequencing and automated whole-genome optical mapping of the genome of a domestic goat (Capra hircus)

(2012) Yang Dong et al.   NATURE BIOTECHNOLOGY

Update on activities at the Universal Protein Resource (UniProt) in 2013

(2012)   NUCLEIC ACIDS RESEARCH

Genetic Evidence for Restricted Dispersal along Continuous Altitudinal Gradients in a Climate Change-Sensitive Mammal: The American Pika

(2012) Philippe Henry et al.   PLoS One

The paradox of keystone species persecuted as pests: A call for the conservation of abundant small mammals in their native range

(2011) Miguel Delibes-Mateos et al.   BIOLOGICAL CONSERVATION

INTERSPECIFIC X-CHROMOSOME AND MITOCHONDRIAL DNA INTROGRESSION IN THE IBERIAN HARE: SELECTION OR ALLELE SURFING?

(2011) José Melo-Ferreira et al.   EVOLUTION

Molecular bases of genetic diversity and evolution of the immunoglobulin heavy chain variable region (IGHV) gene locus in leporids

(2011) Ana Pinheiro et al.   IMMUNOGENETICS

A high-resolution map of human evolutionary constraint using 29 mammals

(2011) Kerstin Lindblad-Toh et al.   NATURE

Full-length transcriptome assembly from RNA-Seq data without a reference genome

(2011) Manfred G Grabherr et al.   NATURE BIOTECHNOLOGY

BAR-PLUS: the Bologna Annotation Resource Plus for functional and structural annotation of protein sequences

(2011) D. Piovesan et al.   NUCLEIC ACIDS RESEARCH

First report of Obeliscoides cuniculi in European brown hare (Lepus europaeus)

(2011) Paolo Tizzani et al.   PARASITOLOGY RESEARCH

Recurrent Introgression of Mitochondrial DNA Among Hares (Lepus spp.) Revealed by Species-Tree Inference and Coalescent Simulations

(2011) J. Melo-Ferreira et al.   SYSTEMATIC BIOLOGY

Histo-Blood Group Antigens Act as Attachment Factors of Rabbit Hemorrhagic Disease Virus Infection in a Virus Strain-Dependent Manner

(2011) Kristina Nyström et al.   PLoS Pathogens

Genome-wide synteny through highly sensitive sequence alignment: Satsuma

(2010) M. G. Grabherr et al.   BIOINFORMATICS

Animal models of psychogenic cardiovascular disorders: what we can learn from them and what we cannot

(2010) Eugene Nalivaiko   CLINICAL AND EXPERIMENTAL PHARMACOLOGY AND PHYSIOLOGY

Comprehensive comparative analysis of strand-specific RNA sequencing methods

(2010) Joshua Z Levin et al.   NATURE METHODS

High-quality draft assemblies of mammalian genomes from massively parallel sequence data

(2010) S. Gnerre et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Epigenetics and the Environmental Regulation of the Genome and Its Function

(2009) Tie-Yuan Zhang et al.   Annual Review of Psychology

Genome 10K: A Proposal to Obtain Whole-Genome Sequence for 10 000 Vertebrate Species

(2009)   JOURNAL OF HEREDITY

Inferring divergence times within pikas (Ochotona spp.) using mtDNA and relaxed molecular dating techniques

(2009) Hayley C. Lanier et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Key Role of European Rabbits in the Conservation of the Western Mediterranean Basin Hotspot

(2008) MIGUEL DELIBES-MATEOS et al.   CONSERVATION BIOLOGY

The ubiquitous mountain hare mitochondria: multiple introgressive hybridization in hares, genus Lepus

(2008) P. C Alves et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Evolution of Prolagus sardus (Ochotonidae, Lagomorpha) in the Quaternary of Sardinia Island (Italy)

(2007) Chiara Angelone et al.   QUATERNARY INTERNATIONAL