Clinical Implementation of Routine Whole-genome Sequencing for Hospital Infection Control of Multi-drug Resistant Pathogens

Burden of five healthcare associated infections in Australia

(2022) M. J. Lydeamore et al.   Antimicrobial Resistance and Infection Control

Budget impact analysis of routinely using whole-genomic sequencing of six multidrug-resistant bacterial pathogens in Queensland, Australia

(2021) Louisa G Gordon et al.   BMJ Open

Twelve years of SAMtools and BCFtools

(2021) Petr Danecek et al.   GigaScience

A hybrid simulation model approach to examine bacterial genome sequencing during a hospital outbreak

(2020) Thomas M. Elliott et al.   BMC INFECTIOUS DISEASES

Genomic investigation reveals contaminated detergent as the source of an ESBL-producing Klebsiella michiganensis outbreak in a neonatal unit

(2020) Paul Chapman et al.   JOURNAL OF CLINICAL MICROBIOLOGY

Integrating multiple genomic technologies to investigate an outbreak of carbapenemase-producing Enterobacter hormaechei

(2020) Leah W. Roberts et al.   Nature Communications

Health and economic burden of antimicrobial-resistant infections in Australian hospitals: a population-based model

(2019) Teresa M. Wozniak et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Translating genomics into practice for real-time surveillance and response to carbapenemase-producing Enterobacteriaceae: evidence from a complex multi-institutional KPC outbreak

(2018) Jason C. Kwong et al.   PeerJ

Vital Signs: Estimated Effects of a Coordinated Approach for Action to Reduce Antibiotic-Resistant Infections in Health Care Facilities — United States

(2015) Rachel B. Slayton et al.   MMWR-MORBIDITY AND MORTALITY WEEKLY REPORT

Trends, risk factors and outcomes of healthcare-associated infections within the Italian network SPIN-UTI

(2013) A. Agodi et al.   JOURNAL OF HOSPITAL INFECTION

Clinical epidemiology of the global expansion of Klebsiella pneumoniae carbapenemases

(2013) L Silvia Munoz-Price et al.   LANCET INFECTIOUS DISEASES

Emergence of Epidemic Multidrug-Resistant Enterococcus faecium from Animal and Commensal Strains

(2013) F. Lebreton et al.   mBio

Healthcare-Associated Infection and Hospital Readmission

(2012) Carley B. Emerson et al.   INFECTION CONTROL AND HOSPITAL EPIDEMIOLOGY

Transforming clinical microbiology with bacterial genome sequencing

(2012) Xavier Didelot et al.   NATURE REVIEWS GENETICS

The Dominant Australian Community-Acquired Methicillin-Resistant Staphylococcus aureus Clone ST93-IV [2B] Is Highly Virulent and Genetically Distinct

(2011) Kyra Y. L. Chua et al.   PLoS One