propeller: testing for differences in cell type proportions in single cell data

Single-Cell Mapping of Progressive Fetal-to-Adult Transition in Human Naive T Cells

(2021) Daniel G. Bunis et al.   Cell Reports

COVID-19 immune features revealed by a large-scale single-cell transcriptome atlas

(2021) Xianwen Ren et al.   CELL

Sex-Specific Control of Human Heart Maturation by the Progesterone Receptor

(2021) Choon Boon Sim et al.   CIRCULATION

Effects of sex and aging on the immune cell landscape as assessed by single-cell transcriptomic analysis

(2021) Zhaohao Huang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Single-cell landscape of bronchoalveolar immune cells in patients with COVID-19

(2020) Mingfeng Liao et al.   NATURE MEDICINE

muscat detects subpopulation-specific state transitions from multi-sample multi-condition single-cell transcriptomics data

(2020) Helena L. Crowell et al.   Nature Communications

Single cell analysis of the developing mouse kidney provides deeper insight into marker gene expression and ligand-receptor crosstalk

(2019) Alexander N. Combes et al.   DEVELOPMENT

A field guide for the compositional analysis of any-omics data

(2019) Thomas P Quinn et al.   GigaScience

Single-cell RNA-seq reveals the diversity of trophoblast subtypes and patterns of differentiation in the human placenta 

(2018) Yawei Liu et al.   CELL RESEARCH

Single-cell mapping of the thymic stroma identifies IL-25-producing tuft epithelial cells

(2018) Chamutal Bornstein et al.   NATURE

Handling blood cell composition in epigenetic studies on ageing

(2017) Qihua Tan et al.   INTERNATIONAL JOURNAL OF EPIDEMIOLOGY

Cell types in the mouse cortex and hippocampus revealed by single-cell RNA-seq

(2015) A. Zeisel et al.   SCIENCE