New taxonomic framework for Arthrodermataceae: a comprehensive analysis based on their phylogenetic reconstruction, divergence time estimation, phylogenetic split network, and phylogeography

Revealing the non-overlapping characteristics between original centers and genetic diversity of Purpureocillium lilacinum

(2022) Zhiyuan Zhang et al.   Fungal Ecology

The influence of intraspecific sequence variation during DNA metabarcoding: A case study of eleven fungal species

(2021) Eva Lena F. Estensmo et al.   Molecular Ecology Resources

Resolving cryptic species complexes in marine protists: phylogenetic haplotype networks meet global DNA metabarcoding datasets

(2021) Daniele De Luca et al.   ISME Journal

Neofusicoccum caryigenum, a new species causing leaf dieback disease of pecan (Carya illinoinensis)

(2021) Marin T. Brewer et al.   MYCOLOGIA

Infraspecific variation of some brown Parmeliae (in Poland) – a comparison of ITS rDNA and non-molecular characters

(2021) Katarzyna Szczepańska et al.   MycoKeys

Recent advances in the diagnosis of dermatophytosis

(2020) Jubeda Begum et al.   JOURNAL OF BASIC MICROBIOLOGY

Species distribution of the main aetiologic agents causing skin dermatophytosis in Colombian patients: A 23‐year experience at a Mycological Reference Center

(2020) Daniel Fernando Carrascal‐Correa et al.   MYCOSES

Toward a Fully Resolved Fungal Tree of Life

(2020) Timothy Y. James et al.   Annual Review of Microbiology

Culturable mycobiota from Karst caves in China II, with descriptions of 33 new species

(2020) Zhi-Feng Zhang et al.   FUNGAL DIVERSITY

Integrative taxonomy and species delimitation of Rhipicephalus turanicus (Acari: Ixodida: Ixodidae)

(2020) Deon K. Bakkes et al.   INTERNATIONAL JOURNAL FOR PARASITOLOGY

Three-gene phylogeny of the genus Arthroderma: Basis for future taxonomic studies

(2020) Steven Hainsworth et al.   MEDICAL MYCOLOGY

TBtools: An Integrative Toolkit Developed for Interactive Analyses of Big Biological Data

(2020) Chengjie Chen et al.   Molecular Plant

Genetic variation and demographic history analysis of Pestalotiopsis , Pseudopestalotiopsis , and Neopestalotiopsis fungi associated with tea ( Camellia sinensis ) inferred from the internal transcribed spacer region of the nuclear ribosomal DNA

(2020) Lijiao Chen et al.   PLANT PATHOLOGY

Prevalence of dermatophytosis in animals and antifungal susceptibility testing of isolated Trichophyton and Microsporum species

(2020) Jubeda Begum et al.   TROPICAL ANIMAL HEALTH AND PRODUCTION

Birth of an order: comprehensive molecular phylogenetic study excludes Herpomyces (Fungi, Laboulbeniomycetes) from Laboulbeniales

(2019) Danny Haelewaters et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Phylogeny and taxonomy of three new Ctenomyces (Arthrodermataceae, Onygenales) species from China

(2019) Zhi-Yuan Zhang et al.   MycoKeys

Ribosomal DNA polymorphisms reveal genetic structure and a phylogeographic pattern in the Burgundy truffle Tuber aestivum Vittad.

(2019) Claudia Riccioni et al.   MYCOLOGIA

Agricultural intensification reduces microbial network complexity and the abundance of keystone taxa in roots

(2019) Samiran Banerjee et al.   ISME Journal

Molecular and Phenotypic Characterization of Nannizzia (Arthrodermataceae)

(2019) Karolina Dukik et al.   MYCOPATHOLOGIA

Updating the Taxonomy of Dermatophytes of the BCCM/IHEM Collection According to the New Standard: A Phylogenetic Approach

(2019) F. Baert et al.   MYCOPATHOLOGIA

Mycorrhiza: genotype assignment using phylogenetic networks

(2019) Jeremy Georges-Filteau et al.   BIOINFORMATICS

Evolutionary biogeography on Ophiocordyceps sinensis: An indicator of molecular phylogeny to geochronological and ecological exchanges

(2019) Yongdong Dai et al.   Geoscience Frontiers

Phylogeny of dermatophytes with genomic character evaluation of clinically distinct Trichophyton rubrum and T. violaceum

(2018) P. Zhan et al.   STUDIES IN MYCOLOGY

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

The ranking of fungi: a tribute to David L. Hawksworth on his 70th birthday

(2017) Kevin D. Hyde et al.   FUNGAL DIVERSITY

ModelFinder: fast model selection for accurate phylogenetic estimates

(2017) Subha Kalyaanamoorthy et al.   NATURE METHODS

Towards standardizing taxonomic ranks using divergence times – a case study for reconstruction of the Agaricus taxonomic system

(2016) Rui-Lin Zhao et al.   FUNGAL DIVERSITY

Toward a Novel Multilocus Phylogenetic Taxonomy for the Dermatophytes

(2016) G. Sybren de Hoog et al.   MYCOPATHOLOGIA

Clinical application of a molecular assay for the detection of dermatophytosis and a novel non-invasive sampling technique

(2016) Alice Kizny Gordon et al.   PATHOLOGY

What Is Speciation?

(2016) B. Jesse Shapiro et al.   PLoS Genetics

popart: full-feature software for haplotype network construction

(2015) Jessica W. Leigh et al.   Methods in Ecology and Evolution

Reconstructible Phylogenetic Networks: Do Not Distinguish the Indistinguishable

(2015) Fabio Pardi et al.   PLoS Computational Biology

IQ-TREE: A Fast and Effective Stochastic Algorithm for Estimating Maximum-Likelihood Phylogenies

(2014) Lam-Tung Nguyen et al.   MOLECULAR BIOLOGY AND EVOLUTION

Isolation of Dermatophytes and Related Species from Domestic Fowl (Gallus gallus domesticus)

(2014) Sayaka Yamaguchi et al.   MYCOPATHOLOGIA

Is the Tree of Life the Best Metaphor, Model, or Heuristic for Phylogenetics?

(2014) David A. Morrison   SYSTEMATIC BIOLOGY

FlatNJ: A Novel Network-Based Approach to Visualize Evolutionary and Biogeographical Relationships

(2014) Monika Balvočūtė et al.   SYSTEMATIC BIOLOGY

Ultrafast Approximation for Phylogenetic Bootstrap

(2013) B. Q. Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MAFFT Multiple Sequence Alignment Software Version 7: Improvements in Performance and Usability

(2013) K. Katoh et al.   MOLECULAR BIOLOGY AND EVOLUTION

MEGA6: Molecular Evolutionary Genetics Analysis Version 6.0

(2013) Koichiro Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Dating the Diversification of the Major Lineages of Ascomycota (Fungi)

(2013) María Prieto et al.   PLoS One

Networks: expanding evolutionary thinking

(2013) Eric Bapteste et al.   TRENDS IN GENETICS

Intraspecific ITS Variability in the Kingdom Fungi as Expressed in the International Sequence Databases and Its Implications for Molecular Species Identification

(2012) R. Henrik Nilsson et al.   Evolutionary Bioinformatics

Bayesian Phylogenetics with BEAUti and the BEAST 1.7

(2012) Alexei J. Drummond et al.   MOLECULAR BIOLOGY AND EVOLUTION

Trees and/or networks to display intraspecific DNA sequence variation?

(2012) PATRICK MARDULYN   MOLECULAR ECOLOGY

MrBayes 3.2: Efficient Bayesian Phylogenetic Inference and Model Choice Across a Large Model Space

(2012) Fredrik Ronquist et al.   SYSTEMATIC BIOLOGY

Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and Windows

(2010) LAURENT EXCOFFIER et al.   Molecular Ecology Resources

DnaSP v5: a software for comprehensive analysis of DNA polymorphism data

(2009) P. Librado et al.   BIOINFORMATICS