Two novel temperate bacteriophages co-existing in Aeromonas sp. ARM81 – characterization of their genomes, proteomes and DNA methyltransferases

Variants of a genomic island in Aeromonas salmonicida subsp. salmonicida link isolates with their geographical origins

(2015) Jean-Guillaume Emond-Rheault et al.   VETERINARY MICROBIOLOGY

The Molecular Switch of Telomere Phages: High Binding Specificity of the PY54 Cro Lytic Repressor to a Single Operator Site

(2015) Jens Hammerl et al.   Viruses-Basel

Novel insights into the pathogenicity of epidemic Aeromonas hydrophila ST251 clones from comparative genomics

(2015) Maoda Pang et al.   Scientific Reports

Battling Phages: How Bacteria Defend against Viral Attack

(2015) Kimberley D. Seed   PLoS Pathogens

Diversity and role of plasmids in adaptation of bacteria inhabiting the Lubin copper mine in Poland, an environment rich in heavy metals

(2015) Lukasz Dziewit et al.   Frontiers in Microbiology

Architecture and functions of a multipartite genome of the methylotrophic bacterium Paracoccus aminophilus JCM 7686, containing primary and secondary chromids

(2014) Lukasz Dziewit et al.   BMC GENOMICS

Molecular Characterization of a Novel Temperate Sinorhizobium Bacteriophage, FELM21, Encoding DNA Methyltransferase with CcrM-Like Specificity

(2014) L. Dziewit et al.   JOURNAL OF VIROLOGY

REBASE—a database for DNA restriction and modification: enzymes, genes and genomes

(2014) Richard J. Roberts et al.   NUCLEIC ACIDS RESEARCH

The interplay of restriction-modification systems with mobile genetic elements and their prokaryotic hosts

(2014) Pedro H. Oliveira et al.   NUCLEIC ACIDS RESEARCH

Pfam: the protein families database

(2013) Robert D. Finn et al.   NUCLEIC ACIDS RESEARCH

Altruism can evolve when relatedness is low: evidence from bacteria committing suicide upon phage infection

(2013) D. Refardt et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Importance of prophages to evolution and virulence of bacterial pathogens

(2013) Louis-Charles Fortier et al.   Virulence

DNA adenine methyltransferase (Dam) controls the expression of the cytotoxic enterotoxin (act) gene of Aeromonas hydrophila via tRNA modifying enzyme-glucose-inhibited division protein (GidA)

(2012) Tatiana E. Erova et al.   GENE

Complete Genome Sequence of Bacteriophage phiAS7, a T7-Like Virus That Infects Aeromonas salmonicida subsp. salmonicida

(2012) J. H. Kim et al.   JOURNAL OF VIROLOGY

Complete Genome Sequence of Vibrio parahaemolyticus Bacteriophage vB_VpaM_MAR

(2012) A. Alanis Villa et al.   JOURNAL OF VIROLOGY

Genome-wide mapping of methylated adenine residues in pathogenic Escherichia coli using single-molecule real-time sequencing

(2012) Gang Fang et al.   NATURE BIOTECHNOLOGY

Substrate promiscuity in DNA methyltransferase M.PvuII. A mechanistic insight

(2012) Juan Aranda et al.   ORGANIC & BIOMOLECULAR CHEMISTRY

Antibiotic Susceptibility Profile ofAeromonasSpecies Isolated from Wastewater Treatment Plant

(2012) Isoken H. Igbinosa et al.   TheScientificWorldJOURNAL

Easyfig: a genome comparison visualizer

(2011) M. J. Sullivan et al.   BIOINFORMATICS

Within-host competition determines reproductive success of temperate bacteriophages

(2011) Dominik Refardt   ISME Journal

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

(2011) K. Tamura et al.   MOLECULAR BIOLOGY AND EVOLUTION

Origins of theE. coliStrain Causing an Outbreak of Hemolytic–Uremic Syndrome in Germany

(2011) David A. Rasko et al.   NEW ENGLAND JOURNAL OF MEDICINE

Characterization of DNA methyltransferase specificities using single-molecule, real-time DNA sequencing

(2011) Tyson A. Clark et al.   NUCLEIC ACIDS RESEARCH

Novel non-specific DNA adenine methyltransferases

(2011) Marek Drozdz et al.   NUCLEIC ACIDS RESEARCH

SMART 7: recent updates to the protein domain annotation resource

(2011) I. Letunic et al.   NUCLEIC ACIDS RESEARCH

PHAST: A Fast Phage Search Tool

(2011) Y. Zhou et al.   NUCLEIC ACIDS RESEARCH

Characterization of a novel temperate phage originating from a cereulide-producing Bacillus cereus strain

(2011) Pierre R. Smeesters et al.   RESEARCH IN MICROBIOLOGY

Characterization of a New Plasmid-Like Prophage in a Pandemic Vibrio parahaemolyticus O3:K6 Strain

(2009) S.-F. Lan et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Classification of Myoviridae bacteriophages using protein sequence similarity

(2009) Rob Lavigne et al.   BMC MICROBIOLOGY

Diversity of Prophages in Dominant Staphylococcus aureus Clonal Lineages

(2009) C. Goerke et al.   JOURNAL OF BACTERIOLOGY

The Linear Plasmid Prophage Vp58.5 of Vibrio parahaemolyticus Is Closely Related to the Integrating Phage VHML and Constitutes a New Incompatibility Group of Telomere Phages

(2009) B. Zabala et al.   JOURNAL OF VIROLOGY

Artemis and ACT: viewing, annotating and comparing sequences stored in a relational database

(2008) Tim Carver et al.   BIOINFORMATICS

Archaea diversity within a commercial biogas plant utilizing herbal biomass determined by 16S rDNA andmcrA analysis

(2008) E. Nettmann et al.   JOURNAL OF APPLIED MICROBIOLOGY

The Temperate Marine Phage  HAP-1 of Halomonas aquamarina Possesses a Linear Plasmid-Like Prophage Genome

(2008) J. M. Mobberley et al.   JOURNAL OF VIROLOGY

Reticulate Representation of Evolutionary and Functional Relationships between Phage Genomes

(2008) G. Lima-Mendez et al.   MOLECULAR BIOLOGY AND EVOLUTION

Temperate bacteriophage ΦO18P from an Aeromonas media isolate: Characterization and complete genome sequence

(2007) Frauke Beilstein et al.   VIROLOGY