Functional characterization of the Arabidopsis transcription factor bZIP29 reveals its role in leaf and root development

The bZIP protein VIP1 is involved in touch responses in Arabidopsis roots

(2016) Daisuke Tsugama et al.   PLANT PHYSIOLOGY

Arabidopsis BIRD Zinc Finger Proteins Jointly Stabilize Tissue Boundaries by Confining the Cell Fate Regulator SHORT-ROOT and Contributing to Fate Specification

(2015) Yuchen Long et al.   PLANT CELL

A Repressor Protein Complex Regulates Leaf Growth in Arabidopsis

(2015) Nathalie Gonzalez et al.   PLANT CELL

SnRK1-triggered switch of bZIP63 dimerization mediates the low-energy response in plants

(2015) Andrea Mair et al.   eLife

HTSeq--a Python framework to work with high-throughput sequencing data

(2014) S. Anders et al.   BIOINFORMATICS

Determination and Inference of Eukaryotic Transcription Factor Sequence Specificity

(2014) Matthew T. Weirauch et al.   CELL

An improved toolbox to unravel the plant cellular machinery by tandem affinity purification of Arabidopsis protein complexes

(2014) Jelle Van Leene et al.   Nature Protocols

PLAZA 3.0: an access point for plant comparative genomics

(2014) Sebastian Proost et al.   NUCLEIC ACIDS RESEARCH

ANGUSTIFOLIA3 Binds to SWI/SNF Chromatin Remodeling Complexes to Regulate Transcription during Arabidopsis Leaf Development

(2014) L. Vercruyssen et al.   PLANT CELL

A Generic Tool for Transcription Factor Target Gene Discovery in Arabidopsis Cell Suspension Cultures Based on Tandem Chromatin Affinity Purification

(2014) A. Verkest et al.   PLANT PHYSIOLOGY

Analysis of Functions of VIP1 and Its Close Homologs in Osmosensory Responses of Arabidopsis thaliana

(2014) Daisuke Tsugama et al.   PLoS One

A Genome-Scale Resource for the Functional Characterization of Arabidopsis Transcription Factors

(2014) Jose L. Pruneda-Paz et al.   Cell Reports

bZIPs and WRKYs: two large transcription factor families executing two different functional strategies

(2014) Carles M. Llorca et al.   Frontiers in Plant Science

Postembryonic control of root meristem growth and development

(2013) Rosangela Sozzani et al.   CURRENT OPINION IN PLANT BIOLOGY

Plant bZIP Transcription Factors Responsive to Pathogens: A Review

(2013) Murilo Alves et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

The cell-cycle interactome: a source of growth regulators?

(2013) Jonas Blomme et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative Phosphoproteomics after Auxin-stimulated Lateral Root Induction Identifies an SNX1 Protein Phosphorylation Site Required for Growth

(2013) Hongtao Zhang et al.   MOLECULAR & CELLULAR PROTEOMICS

Guard Cell Purification and RNA Isolation Suitable for High-Throughput Transcriptional Analysis of Cell-Type Responses to Biotic Stresses

(2013) Nisita Obulareddy et al.   MOLECULAR PLANT-MICROBE INTERACTIONS

A map of cell type-specific auxin responses

(2013) B. O. R. Bargmann et al.   Molecular Systems Biology

Quantitative phosphoproteomics identifies SnRK2 protein kinase substrates and reveals the effectors of abscisic acid action

(2013) P. Wang et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

ERF115 Controls Root Quiescent Center Cell Division and Stem Cell Replenishment

(2013) J. Heyman et al.   SCIENCE

Genetics and Phosphoproteomics Reveal a Protein Phosphorylation Network in the Abscisic Acid Signaling Pathway in Arabidopsis thaliana

(2013) T. Umezawa et al.   Science Signaling

Characterization of VIP1 activity as a transcriptional regulator in vitro and in planta

(2013) Benoît Lacroix et al.   Scientific Reports

Integrative Genomics Viewer (IGV): high-performance genomics data visualization and exploration

(2012) H. Thorvaldsdottir et al.   BRIEFINGS IN BIOINFORMATICS

CORNET 2.0: integrating plant coexpression, protein-protein interactions, regulatory interactions, gene associations and functional annotations

(2012) Stefanie De Bodt et al.   NEW PHYTOLOGIST

A bZIP Protein, VIP1, Is a Regulator of Osmosensory Signaling in Arabidopsis

(2012) D. Tsugama et al.   PLANT PHYSIOLOGY

SAMBA, a plant-specific anaphase-promoting complex/cyclosome regulator is involved in early development and A-type cyclin stabilization

(2012) N. B. Eloy et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Leaf size control: complex coordination of cell division and expansion

(2012) Nathalie Gonzalez et al.   TRENDS IN PLANT SCIENCE

Brassinosteroid perception in the epidermis controls root meristem size

(2011) Y. Hacham et al.   DEVELOPMENT

The UniProt-GO Annotation database in 2011

(2011) E. C. Dimmer et al.   NUCLEIC ACIDS RESEARCH

The Arabidopsis Information Resource (TAIR): improved gene annotation and new tools

(2011) Philippe Lamesch et al.   NUCLEIC ACIDS RESEARCH

RSAT peak-motifs: motif analysis in full-size ChIP-seq datasets

(2011) Morgane Thomas-Chollier et al.   NUCLEIC ACIDS RESEARCH

Activity of transcription factor JACKDAW is essential for SHR/SCR-dependent activation of SCARECROW and MAGPIE and is modulated by reciprocal interactions with MAGPIE, SCARECROW and SHORT ROOT

(2011) Hiromi Ogasawara et al.   PLANT MOLECULAR BIOLOGY

Evidence for Network Evolution in an Arabidopsis Interactome Map

(2011) et al.   SCIENCE

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Fast and SNP-tolerant detection of complex variants and splicing in short reads

(2010) T. D. Wu et al.   BIOINFORMATICS

Isolation and characterization of low-sulphur-tolerant mutants of Arabidopsis

(2010) Yu Wu et al.   JOURNAL OF EXPERIMENTAL BOTANY

Targeted interactomics reveals a complex core cell cycle machinery in Arabidopsis thaliana

(2010) Jelle Van Leene et al.   Molecular Systems Biology

Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein action

(2010) Sona Pandey et al.   Molecular Systems Biology

Oscillating Gene Expression Determines Competence for Periodic Arabidopsis Root Branching

(2010) Miguel A. Moreno-Risueno et al.   SCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Plant 14-3-3 proteins catch up with their mammalian orthologs

(2009) Claudia Oecking et al.   CURRENT OPINION IN PLANT BIOLOGY

A rapid and non-destructive screenable marker, FAST, for identifying transformed seeds ofArabidopsis thaliana

(2009) Takashi L. Shimada et al.   PLANT JOURNAL

VIP1 response elements mediate mitogen-activated protein kinase 3-induced stress gene expression

(2009) A. Pitzschke et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Phylogeny.fr: robust phylogenetic analysis for the non-specialist

(2008) A. Dereeper et al.   NUCLEIC ACIDS RESEARCH

ATTED-II provides coexpressed gene networks for Arabidopsis

(2008) T. Obayashi et al.   NUCLEIC ACIDS RESEARCH

Functional Proteomics of Arabidopsis thaliana Guard Cells Uncovers New Stomatal Signaling Pathways

(2008) Z. Zhao et al.   PLANT CELL

High Humidity Induces Abscisic Acid 8'-Hydroxylase in Stomata and Vasculature to Regulate Local and Systemic Abscisic Acid Responses in Arabidopsis

(2008) M. Okamoto et al.   PLANT PHYSIOLOGY

An AGAMOUS-Related MADS-Box Gene, XAL1 (AGL12), Regulates Root Meristem Cell Proliferation and Flowering Transition in Arabidopsis

(2008) R. Tapia-Lopez et al.   PLANT PHYSIOLOGY

A Role for AtWRKY23 in Feeding Site Establishment of Plant-Parasitic Nematodes

(2008) W. Grunewald et al.   PLANT PHYSIOLOGY

Post-translational regulation of plant bZIP factors

(2008) Katia Schütze et al.   TRENDS IN PLANT SCIENCE

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY