Long-term nitrogen deposition enhances microbial capacities in soil carbon stabilization but reduces network complexity

Microbial functional traits are sensitive indicators of mild disturbance by lamb grazing

(2019) Xingyu Ma et al.   ISME Journal

The microbial nitrogen-cycling network

(2018) Marcel M. M. Kuypers et al.   NATURE REVIEWS MICROBIOLOGY

Nitrogen Addition Decreases Dissimilatory Nitrate Reduction to Ammonium in Rice Paddies

(2018) Arjun Pandey et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Microbial functional trait of rRNA operon copy numbers increases with organic levels in anaerobic digesters

(2017) Linwei Wu et al.   ISME Journal

Responses of soil microbial functional genes to global changes are indirectly influenced by aboveground plant biomass variation

(2017) Hui Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Adaptation of soil nitrifiers to very low nitrogen level jeopardizes the efficiency of chemical fertilization in west african moist savannas

(2017) Féline L. Assémien et al.   Scientific Reports

Global patterns and substrate-based mechanisms of the terrestrial nitrogen cycle

(2016) Shuli Niu et al.   ECOLOGY LETTERS

Experimental fire increases soil carbon dioxide efflux in a grassland long-term multifactor global change experiment

(2016) Aaron L. Strong et al.   GLOBAL CHANGE BIOLOGY

Nitrogen deposition and greenhouse gas emissions from grasslands: uncertainties and future directions

(2016) Nuria Gomez-Casanovas et al.   GLOBAL CHANGE BIOLOGY

Nonlinear, interacting responses to climate limit grassland production under global change

(2016) Kai Zhu et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Response of microbial functional groups involved in soil N cycle to N, P and NP fertilization in Tibetan alpine meadows

(2016) Wenbin Ma et al.   SOIL BIOLOGY & BIOCHEMISTRY

Predicting the Responses of Soil Nitrite-Oxidizers to Multi-Factorial Global Change: A Trait-Based Approach

(2016) Xavier Le Roux et al.   Frontiers in Microbiology

Exploiting rRNA operon copy number to investigate bacterial reproductive strategies

(2016) Benjamin R. K. Roller et al.   Nature Microbiology

Coupling Between and Among Ammonia Oxidizers and Nitrite Oxidizers in Grassland Mesocosms Submitted to Elevated CO2 and Nitrogen Supply

(2015) Marie Simonin et al.   MICROBIAL ECOLOGY

Prokaryotes in Subsoil—Evidence for a Strong Spatial Separation of Different Phyla by Analysing Co-occurrence Networks

(2015) Marie Uksa et al.   Frontiers in Microbiology

The interactive effects of soil transplant into colder regions and cropping on soil microbiology and biogeochemistry

(2014) Shanshan Liu et al.   ENVIRONMENTAL MICROBIOLOGY

Microbial mediation of biogeochemical cycles revealed by simulation of global changes with soil transplant and cropping

(2014) Mengxin Zhao et al.   ISME Journal

rrnDB: improved tools for interpreting rRNA gene abundance in bacteria and archaea and a new foundation for future development

(2014) Steven F. Stoddard et al.   NUCLEIC ACIDS RESEARCH

Change in deep soil microbial communities due to long-term fertilization

(2014) Chenhua Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Long-term effects of mineral fertilizers on soil microorganisms – A review

(2014) Daniel Geisseler et al.   SOIL BIOLOGY & BIOCHEMISTRY

Nitrogen, organic carbon and sulphur cycling in terrestrial ecosystems: linking nitrogen saturation to carbon limitation of soil microbial processes

(2013) Jiří Kopáček et al.   BIOGEOCHEMISTRY

The microbial gene diversity along an elevation gradient of the Tibetan grassland

(2013) Yunfeng Yang et al.   ISME Journal

Soil Environmental Conditions and Microbial Build-Up Mediate the Effect of Plant Diversity on Soil Nitrifying and Denitrifying Enzyme Activities in Temperate Grasslands

(2013) Xavier Le Roux et al.   PLoS One

Abundance of microbial genes associated with nitrogen cycling as indices of biogeochemical process rates across a vegetation gradient in Alaska

(2012) Dorthe Groth Petersen et al.   ENVIRONMENTAL MICROBIOLOGY

Responses of the functional structure of soil microbial community to livestock grazing in the Tibetan alpine grassland

(2012) Yunfeng Yang et al.   GLOBAL CHANGE BIOLOGY

Microbial communities and their responses to simulated global change fluctuate greatly over multiple years

(2012) Jessica L. M. Gutknecht et al.   GLOBAL CHANGE BIOLOGY

Consistent effects of nitrogen amendments on soil microbial communities and processes across biomes

(2012) Kelly S. Ramirez et al.   GLOBAL CHANGE BIOLOGY

Microbial composition affects the functioning of estuarine sediments

(2012) Heather E Reed et al.   ISME Journal

Soil pH drives the spatial distribution of bacterial communities along elevation on Changbai Mountain

(2012) Congcong Shen et al.   SOIL BIOLOGY & BIOCHEMISTRY

Soil microbial responses to fire and interacting global change factors in a California annual grassland

(2011) Kathryn M. Docherty et al.   BIOGEOCHEMISTRY

Effects of multiple global change treatments on soil N2O fluxes

(2011) Jamie R. Brown et al.   BIOGEOCHEMISTRY

UCHIME improves sensitivity and speed of chimera detection

(2011) Robert C. Edgar et al.   BIOINFORMATICS

FLASH: fast length adjustment of short reads to improve genome assemblies

(2011) T. Magoc et al.   BIOINFORMATICS

Btrim: A fast, lightweight adapter and quality trimming program for next-generation sequencing technologies

(2011) Yong Kong   GENOMICS

Comparative metagenomic, phylogenetic and physiological analyses of soil microbial communities across nitrogen gradients

(2011) Noah Fierer et al.   ISME Journal

Global Change Could Amplify Fire Effects on Soil Greenhouse Gas Emissions

(2011) Audrey Niboyet et al.   PLoS One

Change in gene abundance in the nitrogen biogeochemical cycle with temperature and nitrogen addition in Antarctic soils

(2011) Jaejoon Jung et al.   RESEARCH IN MICROBIOLOGY

Phylogenetic Molecular Ecological Network of Soil Microbial Communities in Response to Elevated CO2

(2011) J. Zhou et al.   mBio

Testing interactive effects of global environmental changes on soil nitrogen cycling

(2011) A. Niboyet et al.   Ecosphere

Search and clustering orders of magnitude faster than BLAST

(2010) Robert C. Edgar   BIOINFORMATICS

A global perspective on belowground carbon dynamics under nitrogen enrichment

(2010) Lingli Liu et al.   ECOLOGY LETTERS

The effect of nutrient deposition on bacterial communities in Arctic tundra soil

(2010) Barbara J. Campbell et al.   ENVIRONMENTAL MICROBIOLOGY

Soil environmental conditions rather than denitrifier abundance and diversity drive potential denitrification after changes in land uses

(2010) E. ATTARD et al.   GLOBAL CHANGE BIOLOGY

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

Inter-annual variation in soil extra-cellular enzyme activity in response to simulated global change and fire disturbance

(2010) Jessica L.M. Gutknecht et al.   PEDOBIOLOGIA

Global patterns of 16S rRNA diversity at a depth of millions of sequences per sample

(2010) J. G. Caporaso et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Pyrosequencing-Based Assessment of Soil pH as a Predictor of Soil Bacterial Community Structure at the Continental Scale

(2009) C. L. Lauber et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Snapshot of iron response in Shewanella oneidensis by gene network reconstruction

(2009) Yunfeng Yang et al.   BMC GENOMICS

Nitrogen's carbon bonus

(2009) Ivan A. Janssens et al.   Nature Geoscience

Responses of soil nitrogen cycling to the interactive effects of elevated CO2 and inorganic N supply

(2009) Audrey Niboyet et al.   PLANT AND SOIL

NITROGEN LIMITATION OF NET PRIMARY PRODUCTIVITY IN TERRESTRIAL ECOSYSTEMS IS GLOBALLY DISTRIBUTED

(2008) David S. LeBauer et al.   ECOLOGY

Nitrogen additions and microbial biomass: a meta-analysis of ecosystem studies

(2008) Kathleen K. Treseder   ECOLOGY LETTERS

The effects of chronic nitrogen fertilization on alpine tundra soil microbial communities: implications for carbon and nitrogen cycling

(2008) Diana R. Nemergut et al.   ENVIRONMENTAL MICROBIOLOGY

An Earth-system perspective of the global nitrogen cycle

(2008) Nicolas Gruber et al.   NATURE

Global response patterns of terrestrial plant species to nitrogen addition

(2008) Jianyang Xia et al.   NEW PHYTOLOGIST

rrnDB: documenting the number of rRNA and tRNA genes in bacteria and archaea

(2008) Z. M.-P. Lee et al.   NUCLEIC ACIDS RESEARCH

Biochemical cycling in the rhizosphere having an impact on global change

(2008) L. Philippot et al.   PLANT AND SOIL