Single-nucleus RNA-sequencing in pre-cellularization Drosophila melanogaster embryos

CTCF loss has limited effects on global genome architecture in Drosophila despite critical regulatory functions

(2021) Anjali Kaushal et al.   Nature Communications

Modular, efficient and constant-memory single-cell RNA-seq preprocessing

(2021) Páll Melsted et al.   NATURE BIOTECHNOLOGY

Independence of chromatin conformation and gene regulation during Drosophila dorsoventral patterning

(2021) Elizabeth Ing-Simmons et al.   NATURE GENETICS

Whole-animal multiplexed single-cell RNA-seq reveals transcriptional shifts across Clytia medusa cell types

(2021) Tara Chari et al.   Science Advances

The single-cell transcriptional landscape of mammalian organogenesis

(2019) Junyue Cao et al.   NATURE

The Role of Insulation in Patterning Gene Expression

(2019) Özdemir et al.   Genes

Gene expression cartography

(2019) Mor Nitzan et al.   NATURE

The Insulator Protein CTCF Is Required for CorrectHoxGene Expression, but Not for Embryonic Development inDrosophila

(2018) Maria Cristina Gambetta et al.   GENETICS

Patterns of chromatin accessibility along the anterior-posterior axis in the early Drosophila embryo

(2018) Jenna E. Haines et al.   PLoS Genetics

The Insulator Protein CTCF Is Required for CorrectHoxGene Expression, but Not for Embryonic Development inDrosophila

(2018) Maria Cristina Gambetta et al.   GENETICS

Deep generative modeling for single-cell transcriptomics

(2018) Romain Lopez et al.   NATURE METHODS

Histone H3K4 monomethylation catalyzed by Trr and mammalian COMPASS-like proteins at enhancers is dispensable for development and viability

(2017) Ryan Rickels et al.   NATURE GENETICS

TheDrosophilaembryo at single-cell transcriptome resolution

(2017) Nikos Karaiskos et al.   SCIENCE

Convergence of topological domain boundaries, insulators, and polytene interbands revealed by high-resolution mapping of chromatin contacts in the early Drosophila melanogaster embryo

(2017) Michael R Stadler et al.   eLife

Ibf1 and Ibf2 are novel CP190-interacting proteins required for insulator function

(2014) S. Cuartero et al.   EMBO JOURNAL

UpSet: Visualization of Intersecting Sets

(2014) Alexander Lex et al.   IEEE TRANSACTIONS ON VISUALIZATION AND COMPUTER GRAPHICS

Optimized CRISPR/Cas tools for efficient germline and somatic genome engineering in Drosophila

(2014) F. Port et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

SUCCESSIVE GAIN OF INSULATOR PROTEINS IN ARTHROPOD EVOLUTION

(2013) Peter Heger et al.   EVOLUTION

Spatial expression of transcription factors in Drosophila embryonic organ development

(2013) Ann S Hammonds et al.   GENOME BIOLOGY

Nature and function of insulator protein binding sites in the Drosophila genome

(2012) Y. B. Schwartz et al.   GENOME RESEARCH

Drosophila CTCF tandemly aligns with other insulator proteins at the borders of H3K27me3 domains

(2012) K. Van Bortle et al.   GENOME RESEARCH

Cell type–specific chromatin immunoprecipitation from multicellular complex samples using BiTS-ChIP

(2012) Stefan Bonn et al.   Nature Protocols