Application of metagenomic next-generation sequencing for suspected infected pancreatic necrosis

Early diagnosis of sepsis in emergency departments, time to treatment, and association with mortality: An observational study

(2020) Gunnar Husabø et al.   PLoS One

Antibiotic therapy in acute pancreatitis: From global overuse to evidence based recommendations

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Clinical Metagenomic Sequencing for Diagnosis of Meningitis and Encephalitis

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American Gastroenterological Association Clinical Practice Update: Management of Pancreatic Necrosis

(2019) Todd H. Baron et al.   GASTROENTEROLOGY

Adverse clinical outcomes associated with multidrug-resistant organisms in patients with infected pancreatic necrosis

(2019) Caihong Ning et al.   PANCREATOLOGY

mNGS in clinical microbiology laboratories: on the road to maturity

(2019) Dongsheng Han et al.   CRITICAL REVIEWS IN MICROBIOLOGY

Endoscopic management of acute necrotizing pancreatitis: European Society of Gastrointestinal Endoscopy (ESGE) evidence-based multidisciplinary guidelines

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Impact of Antibiotic-Resistant Bacterial and Fungal Infections in Outcome of Acute Pancreatitis

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OUP accepted manuscript

(2018)   CLINICAL INFECTIOUS DISEASES

Identification of pathogens in culture-negative infective endocarditis cases by metagenomic analysis

(2018) Jun Cheng et al.   Annals of Clinical Microbiology and Antimicrobials

Does Early and Appropriate Antibiotic Administration Improve Mortality in Emergency Department Patients with Severe Sepsis or Septic Shock?

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Outcomes From Minimal Access Retroperitoneal and Open Pancreatic Necrosectomy in 394 Patients With Necrotizing Pancreatitis

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Diagnosis of Sepsis with Cell-free DNA by Next-Generation Sequencing Technology in ICU Patients

(2016) Yun Long et al.   ARCHIVES OF MEDICAL RESEARCH

Metagenomic diagnostics for the simultaneous detection of multiple pathogens in human stool specimens from Côte d'Ivoire: a proof-of-concept study

(2016) Pierre H.H. Schneeberger et al.   INFECTION GENETICS AND EVOLUTION

Diagnostic strategy and timing of intervention in infected necrotizing pancreatitis: an international expert survey and case vignette study

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Medical Versus Surgical Management for Emphysematous Pancreatic Necrosis

(2015) Luis Barreda et al.   PANCREAS

The Feasibility Study of Non-Invasive Fetal Trisomy 18 and 21 Detection with Semiconductor Sequencing Platform

(2014) Young Joo Jeon et al.   PLoS One

The Strengthening the Reporting of Observational Studies in Epidemiology (STROBE) Statement: Guidelines for reporting observational studies

(2014) Erik von Elm et al.   International Journal of Surgery

Quality control and preprocessing of metagenomic datasets

(2011) R. Schmieder et al.   BIOINFORMATICS

Minimal Access Retroperitoneal Pancreatic Necrosectomy

(2010) Michael G. T. Raraty et al.   ANNALS OF SURGERY

BEDTools: a flexible suite of utilities for comparing genomic features

(2010) Aaron R. Quinlan et al.   BIOINFORMATICS

Systematic review of percutaneous catheter drainage as primary treatment for necrotizing pancreatitis

(2010) M. C. van Baal et al.   BRITISH JOURNAL OF SURGERY

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS