Structural and functional characterization of DdrC, a novel DNA damage-induced nucleoid associated protein involved in DNA compaction

New insights into the activation of Radiation Desiccation Response regulon in Deinococcus radiodurans

(2021) Anaganti Narasimha et al.   JOURNAL OF BIOSCIENCES

Redox signaling through zinc activates the radiation response in Deinococcus bacteria

(2021) Romaric Magerand et al.   Scientific Reports

Fast and sensitive taxonomic assignment to metagenomic contigs

(2021) M Mirdita et al.   BIOINFORMATICS

Coexistence of SOS-Dependent and SOS-Independent Regulation of DNA Repair Genes in Radiation-Resistant Deinococcus Bacteria

(2021) Laurence Blanchard et al.   Cells

Characterization of the DdrD protein from the extremely radioresistant bacterium Deinococcus radiodurans

(2021) Claire Bouthier de la Tour et al.   EXTREMOPHILES

Highly accurate protein structure prediction with AlphaFold

(2021) John Jumper et al.   NATURE

Accurate prediction of protein structures and interactions using a three-track neural network

(2021) Minkyung Baek et al.   SCIENCE

Characterization of the Radiation Desiccation Response Regulon of the Radioresistant Bacterium Deinococcus radiodurans by Integrative Genomic Analyses

(2021) Nicolas Eugénie et al.   Cells

Nucleoid Associated Proteins: The Small Organizers That Help to Cope With Stress

(2020) Joanna Hołówka et al.   Frontiers in Microbiology

Natural Transformation in Deinococcus radiodurans: A Genetic Analysis Reveals the Major Roles of DprA, DdrB, RecA, RecF, and RecO Proteins

(2020) Solenne Ithurbide et al.   Frontiers in Microbiology

Crystal structure of the transcriptional repressor DdrO: insight into the metalloprotease/repressor-controlled radiation response in Deinococcus

(2019) Arjan de Groot et al.   NUCLEIC ACIDS RESEARCH

Cell morphology and nucleoid dynamics in dividing Deinococcus radiodurans

(2019) Kevin Floc’h et al.   Nature Communications

MMseqs2 enables sensitive protein sequence searching for the analysis of massive data sets

(2017) Martin Steinegger et al.   NATURE BIOTECHNOLOGY

Conservation and diversity of the IrrE/DdrO-controlled radiation response in radiation-resistant Deinococcus bacteria

(2017) Laurence Blanchard et al.   MicrobiologyOpen

In vivo and in vitro characterization of DdrC, a DNA damage response protein in Deinococcus radiodurans bacterium

(2017) Claire Bouthier de la Tour et al.   PLoS One

Bacterial chromatin: converging views at different scales

(2016) Remus T Dame et al.   CURRENT OPINION IN CELL BIOLOGY

Molecular insights into DNA binding and anchoring by theBacillus subtilissporulation kinetochore-like RacA protein

(2016) Maria A. Schumacher et al.   NUCLEIC ACIDS RESEARCH

A Decade of Biochemical and Structural Studies of the DNA Repair Machinery of Deinococcus radiodurans: Major Findings, Functional and Mechanistic Insight and Challenges

(2016) Joanna Timmins et al.   Computational and Structural Biotechnology Journal

The abundant and essential HU proteins in Deinococcus deserti and Deinococcus radiodurans are translated from leaderless mRNA

(2015) Claire Bouthier de la Tour et al.   MICROBIOLOGY-SGM

Nucleoid organization in the radioresistant bacteriumDeinococcus radiodurans

(2015) Fanny Marie Passot et al.   MOLECULAR MICROBIOLOGY

DdrO is an essential protein that regulates the radiation desiccation response and the apoptotic-like cell death in the radioresistantDeinococcus radioduransbacterium

(2015) Alice Devigne et al.   MOLECULAR MICROBIOLOGY

Parmbsc1: a refined force field for DNA simulations

(2015) Ivan Ivani et al.   NATURE METHODS

Protease Activity of PprI Facilitates DNA Damage Response: Mn(2+)-Dependence and Substrate Sequence-Specificity of the Proteolytic Reaction

(2015) Yunguang Wang et al.   PLoS One

Multilayer chromosome organization through DNA bending, bridging and extrusion

(2014) Stephan Gruber   CURRENT OPINION IN MICROBIOLOGY

Radiation response inDeinococcus deserti: IrrE is a metalloprotease that cleaves repressor protein DdrO

(2014) Monika Ludanyi et al.   MOLECULAR MICROBIOLOGY

Comparative proteomics reveals key proteins recruited at the nucleoid ofDeinococcusafter irradiation-induced DNA damage

(2013) Claire Bouthier de la Tour et al.   PROTEOMICS

Automatic protein structure solution from weak X-ray data

(2013) Pavol Skubák et al.   Nature Communications

The deinococcal DdrB protein is involved in an early step of DNA double strand break repair and in plasmid transformation through its single-strand annealing activity

(2011) Claire Bouthier de la Tour et al.   DNA REPAIR

PROPKA3: Consistent Treatment of Internal and Surface Residues in Empirical pKaPredictions

(2011) Mats H. M. Olsson et al.   Journal of Chemical Theory and Computation

Gwyddion: an open-source software for SPM data analysis

(2011) David Nečas et al.   Open Physics

Experimental phasing withSHELXC/D/E: combining chain tracing with density modification

(2010) George M. Sheldrick   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Recent developments in classical density modification

(2010) Kevin Cowtan   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Integration, scaling, space-group assignment and post-refinement

(2010) Wolfgang Kabsch   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Features and development ofCoot

(2010) P. Emsley et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

PHENIX: a comprehensive Python-based system for macromolecular structure solution

(2010) Paul D. Adams et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

DdrB stimulates single-stranded DNA annealing and facilitates RecA-independent DNA repair in Deinococcus radiodurans

(2010) Guangzhi Xu et al.   DNA REPAIR

MolProbity: all-atom structure validation for macromolecular crystallography

(2009) Vincent B. Chen et al.   ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY

Crystal Structure of the IrrE Protein, a Central Regulator of DNA Damage Repair in Deinococcaceae

(2009) Andreja Vujičić-Žagar et al.   JOURNAL OF MOLECULAR BIOLOGY

Complex oligomeric structure of a truncated form of DdrA: A protein required for the extreme radiotolerance of Deinococcus

(2008) Irina Gutsche et al.   BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS

DNA protection by histone-like protein HU from the hyperthermophilic eubacterium Thermotoga maritima

(2008) Anirban Mukherjee et al.   NUCLEIC ACIDS RESEARCH