Screening thousands of transcribed coding and non-coding regions reveals sequence determinants of RNA polymerase II elongation potential
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
Screening thousands of transcribed coding and non-coding regions reveals sequence determinants of RNA polymerase II elongation potential
Authors
Keywords
-
Journal
NATURE STRUCTURAL & MOLECULAR BIOLOGY
Volume 29, Issue 6, Pages 613-620
Publisher
Springer Science and Business Media LLC
Online
2022-06-10
DOI
10.1038/s41594-022-00785-9
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- Integrator is a genome-wide attenuator of non-productive transcription
- (2021) Søren Lykke-Andersen et al. MOLECULAR CELL
- Co-transcriptional splicing regulates 3′ end cleavage during mammalian erythropoiesis
- (2021) Kirsten A. Reimer et al. MOLECULAR CELL
- Structure of a transcribing RNA polymerase II–U1 snRNP complex
- (2021) Suyang Zhang et al. SCIENCE
- Efficient RNA polymerase II pause release requires U2 snRNP function
- (2021) Livia Caizzi et al. MOLECULAR CELL
- Twelve years of SAMtools and BCFtools
- (2021) Petr Danecek et al. GigaScience
- POINT technology illuminates the processing of polymerase-associated intact nascent transcripts
- (2021) Rui Sousa-Luís et al. MOLECULAR CELL
- A first exon termination checkpoint preferentially suppresses extragenic transcription
- (2021) Liv M. I. Austenaa et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- ZC3H4 restricts non-coding transcription in human cells
- (2021) Chris Estell et al. eLife
- Evaluating Enhancer Function and Transcription
- (2020) Andrew Field et al. Annual Review of Biochemistry
- Codon Usage and Splicing Jointly Influence mRNA Localization
- (2020) Christine Mordstein et al. Cell Systems
- Nascent Transcript Folding Plays a Major Role in Determining RNA Polymerase Elongation Rates
- (2020) Tomasz W. Turowski et al. MOLECULAR CELL
- Causes and consequences of RNA polymerase II stalling during transcript elongation
- (2020) Melvin Noe Gonzalez et al. NATURE REVIEWS MOLECULAR CELL BIOLOGY
- Mechanisms of Bacterial Transcription Termination
- (2019) Jeffrey W. Roberts JOURNAL OF MOLECULAR BIOLOGY
- Exon-Mediated Activation of Transcription Starts
- (2019) Ana Fiszbein et al. CELL
- The Integrator Complex Attenuates Promoter-Proximal Transcription at Protein-Coding Genes
- (2019) Nathan D. Elrod et al. MOLECULAR CELL
- Allele-specific control of replication timing and genome organization during development
- (2018) Juan Carlos Rivera-Mulia et al. GENOME RESEARCH
- Transcriptional Pause Sites Delineate Stable Nucleosome-Associated Premature Polyadenylation Suppressed by U1 snRNP
- (2018) Anthony C. Chiu et al. MOLECULAR CELL
- 7SK-BAF axis controls pervasive transcription at enhancers
- (2016) Ryan A Flynn et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- TT-seq maps the human transient transcriptome
- (2016) Björn Schwalb et al. SCIENCE
- 7SK-BAF axis controls pervasive transcription at enhancers
- (2016) Ryan A Flynn et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- fluff: exploratory analysis and visualization of high-throughput sequencing data
- (2016) Georgios Georgiou et al. PeerJ
- The end of the message: multiple protein–RNA interactions define the mRNA polyadenylation site
- (2015) Yongsheng Shi et al. GENES & DEVELOPMENT
- Bidirectional Transcription Arises from Two Distinct Hubs of Transcription Factor Binding and Active Chromatin
- (2015) Benjamin S. Scruggs et al. MOLECULAR CELL
- Pausing of RNA Polymerase II Regulates Mammalian Developmental Potential through Control of Signaling Networks
- (2015) Lucy H. Williams et al. MOLECULAR CELL
- Reorganization of Enhancer Patterns in Transition from Naive to Primed Pluripotency
- (2014) Christa Buecker et al. Cell Stem Cell
- An atlas of active enhancers across human cell types and tissues
- (2014) Robin Andersson et al. NATURE
- Analysis of nascent RNA identifies a unified architecture of initiation regions at mammalian promoters and enhancers
- (2014) Leighton J Core et al. NATURE GENETICS
- CpG domains downstream of TSSs promote high levels of gene expression
- (2014) Simone Krinner et al. NUCLEIC ACIDS RESEARCH
- Easy quantitative assessment of genome editing by sequence trace decomposition
- (2014) Eva K. Brinkman et al. NUCLEIC ACIDS RESEARCH
- Super-Enhancers in the Control of Cell Identity and Disease
- (2013) Denes Hnisz et al. CELL
- Stable Pausing by RNA Polymerase II Provides an Opportunity to Target and Integrate Regulatory Signals
- (2013) Telmo Henriques et al. MOLECULAR CELL
- Promoter directionality is controlled by U1 snRNP and polyadenylation signals
- (2013) Albert E. Almada et al. NATURE
- Polyadenylation site–induced decay of upstream transcripts enforces promoter directionality
- (2013) Evgenia Ntini et al. NATURE STRUCTURAL & MOLECULAR BIOLOGY
- Precise Maps of RNA Polymerase Reveal How Promoters Direct Initiation and Pausing
- (2013) H. Kwak et al. SCIENCE
- STAR: ultrafast universal RNA-seq aligner
- (2012) Alexander Dobin et al. BIOINFORMATICS
- U1 snRNP Determines mRNA Length and Regulates Isoform Expression
- (2012) Michael G. Berg et al. CELL
- Promoter-proximal polyadenylation sites reduce transcription activity
- (2012) P. K. Andersen et al. GENES & DEVELOPMENT
- Inferring gene regulatory logic from high-throughput measurements of thousands of systematically designed promoters
- (2012) Eilon Sharon et al. NATURE BIOTECHNOLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- AT-rich sequence elements promote nascent transcript cleavage leading to RNA polymerase II termination
- (2012) Eleanor White et al. NUCLEIC ACIDS RESEARCH
- Nascent RNA structure modulates the transcriptional dynamics of RNA polymerases
- (2012) B. Zamft et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- First Exon Length Controls Active Chromatin Signatures and Transcription
- (2012) Nicole I. Bieberstein et al. Cell Reports
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- U1 snRNP protects pre-mRNAs from premature cleavage and polyadenylation
- (2010) Daisuke Kaida et al. NATURE
- Using deep sequencing to characterize the biophysical mechanism of a transcriptional regulatory sequence
- (2010) J. B. Kinney et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Ultrafast and memory-efficient alignment of short DNA sequences to the human genome
- (2009) Ben Langmead et al. GENOME BIOLOGY
- A 5′ Splice Site Enhances the Recruitment of Basal Transcription Initiation Factors In Vivo
- (2008) Christian Kroun Damgaard et al. MOLECULAR CELL
- Divergent Transcription from Active Promoters
- (2008) Amy C. Seila et al. SCIENCE
- RNA Exosome Depletion Reveals Transcription Upstream of Active Human Promoters
- (2008) Pascal Preker et al. SCIENCE
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreFind the ideal target journal for your manuscript
Explore over 38,000 international journals covering a vast array of academic fields.
Search