4.4 Review

Chemical Multiverse: An Expanded View of Chemical Space

Journal

MOLECULAR INFORMATICS
Volume 41, Issue 11, Pages -

Publisher

WILEY-V C H VERLAG GMBH
DOI: 10.1002/minf.202200116

Keywords

chemical multiverse; chemical space; drug discovery; machine learning; molecular representation; structure-property relationships; ultra-large chemical library; visualization

Funding

  1. Consejo Nacional de Ciencia y Tecnologia (CONACyT), Mexico [847870, 814741, 848061]
  2. DGAPA, UNAM, Programa de Apoyo a Proyectos de Investigacion e Innovacion Tecnologica (PAPIIT) [IN201321]

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The concept of chemical space, with its technological advances and practical applications, has attracted attention in drug discovery and other research areas. This concept involves a large number of compounds and descriptors encoding molecular structure and properties. This article discusses the definitions of chemical space proposed in literature and highlights the convenience of using complementary descriptors to obtain a comprehensive view of compound data sets. Additionally, the article introduces the concept of chemical multiverse for the comprehensive analysis of compound data sets.
Technological advances and practical applications of the chemical space concept in drug discovery, natural product research, and other research areas have attracted the scientific community's attention. The large- and ultra-large chemical spaces are associated with the significant increase in the number of compounds that can potentially be made and exist and the increasing number of experimental and calculated descriptors, that are emerging that encode the molecular structure and/or property aspects of the molecules. Due to the importance and continued evolution of compound libraries, herein, we discuss definitions proposed in the literature for chemical space and emphasize the convenience, discussed in the literature to use complementary descriptors to obtain a comprehensive view of the chemical space of compound data sets. In this regard, we introduce the term chemical multiverse to refer to the comprehensive analysis of compound data sets through several chemical spaces, each defined by a different set of chemical representations. The chemical multiverse is contrasted with a related idea: consensus chemical space.

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