Microbial community shifts correspond with suppression of decomposition 25 years after liming of acidic forest soils

A group of ectomycorrhizal fungi restricts organic matter accumulation in boreal forest

(2021) Björn D. Lindahl et al.   ECOLOGY LETTERS

A trade-off between plant and soil carbon storage under elevated CO2

(2021) C. Terrer et al.   NATURE

Depth patterns and connections between gross nitrogen cycling and soil exoenzyme activities in three northern hardwood forests

(2020) Bridget A. Darby et al.   SOIL BIOLOGY & BIOCHEMISTRY

Exploring the role of ectomycorrhizal fungi in soil carbon dynamics

(2019) Donald R. Zak et al.   NEW PHYTOLOGIST

SignalP 5.0 improves signal peptide predictions using deep neural networks

(2019) José Juan Almagro Armenteros et al.   NATURE BIOTECHNOLOGY

Testing the dependence of microbial growth and carbon use efficiency on nitrogen availability, pH, and organic matter quality

(2019) Alex Silva-Sánchez et al.   SOIL BIOLOGY & BIOCHEMISTRY

The global soil community and its influence on biogeochemistry

(2019) T. W. Crowther et al.   SCIENCE

Expression and Characteristics of Two Glucose-Tolerant GH1 β-glucosidases From Actinomadura amylolytica YIM 77502T for Promoting Cellulose Degradation

(2018) Yi-Rui Yin et al.   Frontiers in Microbiology

Assessing fungal contributions to cellulose degradation in soil by using high-throughput stable isotope probing

(2018) Chantal Koechli et al.   SOIL BIOLOGY & BIOCHEMISTRY

Biogeography and organic matter removal shape long-term effects of timber harvesting on forest soil microbial communities

(2017) Roland C Wilhelm et al.   ISME Journal

Shift in fungal communities and associated enzyme activities along an age gradient of managed Pinus sylvestris stands

(2017) Julia Kyaschenko et al.   ISME Journal

Embracing the unknown: disentangling the complexities of the soil microbiome

(2017) Noah Fierer   NATURE REVIEWS MICROBIOLOGY

Using community trait-distributions to assign microbial responses to pH changes and Cd in forest soils treated with wood ash

(2017) Carla Cruz-Paredes et al.   SOIL BIOLOGY & BIOCHEMISTRY

FUNGuild: An open annotation tool for parsing fungal community datasets by ecological guild

(2016) Nhu H. Nguyen et al.   Fungal Ecology

Water balance creates a threshold in soil pH at the global scale

(2016) E. W. Slessarev et al.   NATURE

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum

(2016) Martina Peter et al.   Nature Communications

Plant and soil fungal but not soil bacterial communities are linked in long-term fertilized grassland

(2016) Noriko A. Cassman et al.   Scientific Reports

Net effect of liming on soil organic carbon stocks: A review

(2015) R. Paradelo et al.   AGRICULTURE ECOSYSTEMS & ENVIRONMENT

Fitting Linear Mixed-Effects Models Usinglme4

(2015) Douglas Bates et al.   Journal of Statistical Software

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Response to Comment on "Global diversity and geography of soil fungi"

(2015) L. Tedersoo et al.   SCIENCE

Fine root decomposition, nutrient mobilization and fungal communities in a pine forest ecosystem

(2015) Ang Li et al.   SOIL BIOLOGY & BIOCHEMISTRY

Inter-laboratory variation in the chemical analysis of acidic forest soil reference samples from eastern North America

(2015) D. S. Ross et al.   Ecosphere

The Split-Apply-Combine Strategy for Data Analysis

(2015) Hadley Wickham   Journal of Statistical Software

Predicting the responsiveness of soil biodiversity to deforestation: a cross-biome study

(2014) Thomas W. Crowther et al.   GLOBAL CHANGE BIOLOGY

Selection on soil microbiomes reveals reproducible impacts on plant function

(2014) Kevin Panke-Buisse et al.   ISME Journal

A global assessment of precipitation chemistry and deposition of sulfur, nitrogen, sea salt, base cations, organic acids, acidity and pH, and phosphorus

(2013) Robert Vet et al.   ATMOSPHERIC ENVIRONMENT

Soil microbial and nutrient responses to 7 years of seasonally altered precipitation in a Chihuahuan Desert grassland

(2013) Colin W. Bell et al.   GLOBAL CHANGE BIOLOGY

Purification a laccase exhibiting dye decolorizing ability from an edible mushroom Russula virescens

(2013) Meng-Juan Zhu et al.   INTERNATIONAL BIODETERIORATION & BIODEGRADATION

Towards a unified paradigm for sequence-based identification of fungi

(2013) Urmas Kõljalg et al.   MOLECULAR ECOLOGY

phyloseq: An R Package for Reproducible Interactive Analysis and Graphics of Microbiome Census Data

(2013) Paul J. McMurdie et al.   PLoS One

Restoring Soil Calcium Reverses Forest Decline

(2013) John J. Battles et al.   Environmental Science & Technology Letters

Fungal community on decomposing leaf litter undergoes rapid successional changes

(2012) Jana Voříšková et al.   ISME Journal

Cross-biome metagenomic analyses of soil microbial communities and their functional attributes

(2012) N. Fierer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbial control over carbon cycling in soil

(2012) Joshua P. Schimel et al.   Frontiers in Microbiology

Optimization of hydrolytic and oxidative enzyme methods for ecosystem studies

(2011) Donovan P. German et al.   SOIL BIOLOGY & BIOCHEMISTRY

Revisiting Soil Carbon and Nitrogen Sampling

(2011) Benjamin M. Rau et al.   SOIL SCIENCE

Prodigal: prokaryotic gene recognition and translation initiation site identification

(2010) Doug Hyatt et al.   BMC BIOINFORMATICS

Meta-analysis of fertilization experiments indicates multiple limiting nutrients in northeastern deciduous forests

(2010) Matthew A. Vadeboncoeur   CANADIAN JOURNAL OF FOREST RESEARCH

Soil bacterial and fungal communities across a pH gradient in an arable soil

(2010) Johannes Rousk et al.   ISME Journal

The genus Actinoallomurus and some of its metabolites

(2010) Roberta Pozzi et al.   JOURNAL OF ANTIBIOTICS

Forest liming durably impact the communities of ectomycorrhizas and fungal epigeous fruiting bodies

(2009) François Rineau et al.   ANNALS OF FOREST SCIENCE

Belowground ectomycorrhizal fungal communities respond to liming in three southern Swedish coniferous forest stands

(2009) Rasmus Kjøller et al.   FOREST ECOLOGY AND MANAGEMENT

ClassII peroxidase-encoding genes are present in a phylogenetically wide range of ectomycorrhizal fungi

(2009) Inga T M Bödeker et al.   ISME Journal

Environmental and spatial characterisation of bacterial community composition in soil to inform sampling strategies

(2009) Kate L. Baker et al.   SOIL BIOLOGY & BIOCHEMISTRY

Microbial communities and their relevance for ecosystem models: Decomposition as a case study

(2009) Krista L. McGuire et al.   SOIL BIOLOGY & BIOCHEMISTRY

Phenol oxidase, peroxidase and organic matter dynamics of soil

(2009) Robert L. Sinsabaugh   SOIL BIOLOGY & BIOCHEMISTRY

Fine Root Dynamics and Forest Production Across a Calcium Gradient in Northern Hardwood and Conifer Ecosystems

(2008) Byung Bae Park et al.   ECOSYSTEMS

Soil carbon stocks in experimental mesocosms are dependent on the rate of labile carbon, nitrogen and phosphorus inputs to soils

(2008) M. A. Bradford et al.   FUNCTIONAL ECOLOGY