Interferons reshape the 3D conformation and accessibility of macrophage chromatin
Published 2022 View Full Article
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Title
Interferons reshape the 3D conformation and accessibility of macrophage chromatin
Authors
Keywords
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Journal
iScience
Volume 25, Issue 3, Pages 103840
Publisher
Elsevier BV
Online
2022-02-02
DOI
10.1016/j.isci.2022.103840
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Note: Only part of the references are listed.- The nf-core framework for community-curated bioinformatics pipelines
- (2020) Philip A. Ewels et al. NATURE BIOTECHNOLOGY
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- (2020) Louisa Hill et al. NATURE
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- (2020) Michiel J. Thiecke et al. Cell Reports
- Computer vision for pattern detection in chromosome contact maps
- (2020) Cyril Matthey-Doret et al. Nature Communications
- Long-range enhancer–promoter contacts in gene expression control
- (2019) Stefan Schoenfelder et al. NATURE REVIEWS GENETICS
- Sequential conditioning-stimulation reveals distinct gene- and stimulus-specific effects of Type I and II IFN on human macrophage functions
- (2019) Quen Cheng et al. Scientific Reports
- Cooler: scalable storage for Hi-C data and other genomically labeled arrays
- (2019) Nezar Abdennur et al. BIOINFORMATICS
- IFN-γ selectively suppresses a subset of TLR4-activated genes and enhancers to potentiate macrophage activation
- (2019) Kyuho Kang et al. Nature Communications
- A molecular switch from STAT2-IRF9 to ISGF3 underlies interferon-induced gene transcription
- (2019) Ekaterini Platanitis et al. Nature Communications
- Differential Activation of the Transcription Factor IRF1 Underlies the Distinct Immune Responses Elicited by Type I and Type III Interferons
- (2019) Adriana Forero et al. IMMUNITY
- Transcriptional Responses to IFN-γ Require Mediator Kinase-Dependent Pause Release and Mechanistically Distinct CDK8 and CDK19 Functions
- (2019) Iris Steinparzer et al. MOLECULAR CELL
- Landscape of stimulation-responsive chromatin across diverse human immune cells
- (2019) Diego Calderon et al. NATURE GENETICS
- DNA loop extrusion by human cohesin
- (2019) Iain F. Davidson et al. SCIENCE
- Human cohesin compacts DNA by loop extrusion
- (2019) Yoori Kim et al. SCIENCE
- Thrombopoietin signaling to chromatin elicits rapid and pervasive epigenome remodeling within poised chromatin architectures
- (2018) Federico Comoglio et al. GENOME RESEARCH
- Transcription Elongation Can Affect Genome 3D Structure
- (2018) Sven Heinz et al. CELL
- Control of inducible gene expression links cohesin to hematopoietic progenitor self-renewal and differentiation
- (2018) Sergi Cuartero et al. NATURE IMMUNOLOGY
- Organizational principles of 3D genome architecture
- (2018) M. Jordan Rowley et al. NATURE REVIEWS GENETICS
- The C-Terminal Transactivation Domain of STAT1 Has a Gene-Specific Role in Transactivation and Cofactor Recruitment
- (2018) Matthias Parrini et al. Frontiers in Immunology
- Regulatory Networks Involving STATs, IRFs, and NFκB in Inflammation
- (2018) Ekaterini Platanitis et al. Frontiers in Immunology
- HiCRep: assessing the reproducibility of Hi-C data using a stratum-adjusted correlation coefficient
- (2017) Tao Yang et al. GENOME RESEARCH
- Two independent modes of chromatin organization revealed by cohesin removal
- (2017) Wibke Schwarzer et al. NATURE
- Canonical and Non-Canonical Aspects of JAK–STAT Signaling: Lessons from Interferons for Cytokine Responses
- (2017) Andrea Majoros et al. Frontiers in Immunology
- Parsing the Interferon Transcriptional Network and Its Disease Associations
- (2016) Sara Mostafavi et al. CELL
- The 3D Genome as Moderator of Chromosomal Communication
- (2016) Job Dekker et al. CELL
- The Shh Topological Domain Facilitates the Action of Remote Enhancers by Reducing the Effects of Genomic Distances
- (2016) Orsolya Symmons et al. DEVELOPMENTAL CELL
- The macrophage IRF8/IRF1 regulome is required for protection against infections and is associated with chronic inflammation
- (2016) David Langlais et al. JOURNAL OF EXPERIMENTAL MEDICINE
- Organization and function of the 3D genome
- (2016) Boyan Bonev et al. NATURE REVIEWS GENETICS
- STAT2 Is a Pervasive Cytokine Regulator due to Its Inhibition of STAT1 in Multiple Signaling Pathways
- (2016) Johnathan Ho et al. PLOS BIOLOGY
- A dualcis-regulatory code links IRF8 to constitutive and inducible gene expression in macrophages
- (2015) Alessandra Mancino et al. GENES & DEVELOPMENT
- Noncanonical Effects of IRF9 in Intestinal Inflammation: More than Type I and Type III Interferons
- (2015) Isabella Rauch et al. MOLECULAR AND CELLULAR BIOLOGY
- Cooperative Transcriptional Activation of Antimicrobial Genes by STAT and NF-κB Pathways by Concerted Recruitment of the Mediator Complex
- (2015) Sebastian Wienerroither et al. Cell Reports
- Interferon-Stimulated Genes: A Complex Web of Host Defenses
- (2014) William M. Schneider et al. Annual Review of Immunology
- Control of Cell Identity Genes Occurs in Insulated Neighborhoods in Mammalian Chromosomes
- (2014) Jill M. Dowen et al. CELL
- Distinct structural transitions of chromatin topological domains correlate with coordinated hormone-induced gene regulation
- (2014) François Le Dily et al. GENES & DEVELOPMENT
- Latent Enhancers Activated by Stimulation in Differentiated Cells
- (2013) Renato Ostuni et al. CELL
- The Human RVB Complex Is Required for Efficient Transcription of Type I Interferon-Stimulated Genes
- (2013) L. Gnatovskiy et al. MOLECULAR AND CELLULAR BIOLOGY
- A high-resolution map of the three-dimensional chromatin interactome in human cells
- (2013) Fulai Jin et al. NATURE
- Constitutive Type I Interferon Modulates Homeostatic Balance through Tonic Signaling
- (2012) Daniel J. Gough et al. IMMUNITY
- The JAK-STAT Pathway at Twenty
- (2012) George R. Stark et al. IMMUNITY
- Topological domains in mammalian genomes identified by analysis of chromatin interactions
- (2012) Jesse R. Dixon et al. NATURE
- Inborn errors of anti-viral interferon immunity in humans
- (2011) Vanessa Sancho-Shimizu et al. Current Opinion in Virology
- Simple Combinations of Lineage-Determining Transcription Factors Prime cis-Regulatory Elements Required for Macrophage and B Cell Identities
- (2010) Sven Heinz et al. MOLECULAR CELL
- Immediate mediators of the inflammatory response are poised for gene activation through RNA polymerase II stalling
- (2009) K. Adelman et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Comprehensive Mapping of Long-Range Interactions Reveals Folding Principles of the Human Genome
- (2009) E. Lieberman-Aiden et al. SCIENCE
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