Increased Heat Resilience of Intraspecific Outbred Compared to Inbred Lineages in the Kelp Laminaria digitata: Physiology and Transcriptomics

Mates Matter: Gametophyte Kinship Recognition and Inbreeding in the Giant Kelp, Macrocystis pyrifera (Laminariales, Phaeophyceae)

(2021) Carolina Camus et al.   JOURNAL OF PHYCOLOGY

Large-scale shift in the structure of a kelp forest ecosystem co-occurs with an epizootic and marine heatwave

(2021) Meredith L. McPherson et al.   Communications Biology

Looks can be deceiving: contrasting temperature characteristics of two morphologically similar kelp species co-occurring in the Arctic

(2021) Kiara Franke et al.   BOTANICA MARINA

Differential gene expression patterns during gametophyte development provide insights into sex differentiation in the dioicous kelp Saccharina japonica

(2021) Jiaxun Zhang et al.   BMC PLANT BIOLOGY

Genotypic variation in response to extreme events may facilitate kelp adaptation under future climates

(2021) NA Alsuwaiyan et al.   MARINE ECOLOGY PROGRESS SERIES

Marine Heatwave Drives Cryptic Loss of Genetic Diversity in Underwater Forests

(2020) Carlos Frederico Deluqui Gurgel et al.   CURRENT BIOLOGY

Host and pathogen autophagy are central to the inducible local defences and systemic response of the giant kelp Macrocystis pyrifera against the oomycete pathogen Anisolpidium ectocarpii

(2020) Pedro Murúa et al.   NEW PHYTOLOGIST

Hierarchical genetic structuring in the cool boreal kelp, Laminaria digitata: implications for conservation and management

(2020) Nathan G King et al.   ICES JOURNAL OF MARINE SCIENCE

DNA barcoding and mucilage ducts in the stipe reveal the presence of Hedophyllum nigripes (Laminariales, Phaeophyceae) in Kongsfjorden (Spitsbergen)

(2020) Marie Dankworth et al.   JOURNAL OF PHYCOLOGY

Thermal traits for reproduction and recruitment differ between Arctic and Atlantic kelp Laminaria digitata

(2020) Neusa Martins et al.   PLoS One

Genetic tropicalisation following a marine heatwave

(2020) Melinda A. Coleman et al.   Scientific Reports

Thermal Plasticity of the Kelp Laminaria digitata (Phaeophyceae) Across Life Cycle Stages Reveals the Importance of Cold Seasons for Marine Forests

(2020) Daniel Liesner et al.   Frontiers in Marine Science

Restore or Redefine: Future Trajectories for Restoration

(2020) Melinda Ann Coleman et al.   Frontiers in Marine Science

Heat stress responses and population genetics of the kelp Laminaria digitata (Phaeophyceae) across latitudes reveal differentiation among North Atlantic populations

(2020) Daniel Liesner et al.   Ecology and Evolution

Exploring Core Response Mechanisms to Multiple Environmental Stressors Via A Genome‐Wide Study in the Brown Alga Saccharina japonica (Laminariales, Phaeophyceae) 1

(2020) Xiaowen Zhang et al.   JOURNAL OF PHYCOLOGY

Marine heatwaves threaten global biodiversity and the provision of ecosystem services

(2019) Dan A. Smale et al.   Nature Climate Change

Evidence for different thermal ecotypes in range centre and trailing edge kelp populations

(2019) Nathan G. King et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Rice sulfoquinovosyltransferase SQD2.1 mediates flavonoid glycosylation and enhances tolerance to osmotic stress

(2019) Xinqiao Zhan et al.   PLANT CELL AND ENVIRONMENT

Hybrid vigour for thermal tolerance in hybrids between the allopatric kelps Laminaria digitata and L. pallida (Laminariales, Phaeophyceae) with contrasting thermal affinities

(2019) Neusa Martins et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Responses of the kelp Saccharina latissima (Phaeophyceae) to the warming Arctic: from physiology to transcriptomics

(2019) Huiru Li et al.   PHYSIOLOGIA PLANTARUM

Sex-dependent and -independent transcriptional changes during haploid phase gametogenesis in the sugar kelp Saccharina latissima

(2019) Gareth A. Pearson et al.   PLoS One

rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data

(2019) Elena Bushmanova et al.   GigaScience

Is geographical variation driving the transcriptomic responses to multiple stressors in the kelp Saccharina latissima?

(2019) Cátia Marina Machado Monteiro et al.   BMC PLANT BIOLOGY

Recent research on the mechanism of heterosis is important for crop and vegetable breeding systems

(2018) Ryo Fujimoto et al.   BREEDING SCIENCE

UV Chromosomes and Haploid Sexual Systems

(2018) Susana Margarida Coelho et al.   TRENDS IN PLANT SCIENCE

Longer and more frequent marine heatwaves over the past century

(2018) Eric C. J. Oliver et al.   Nature Communications

Genetic diversity and kelp forest vulnerability to climatic stress

(2018) Thomas Wernberg et al.   Scientific Reports

NDH-1 Is Important for Photosystem I Function of Synechocystis sp. Strain PCC 6803 under Environmental Stress Conditions

(2018) Jiaohong Zhao et al.   Frontiers in Plant Science

First global transcriptome analysis of brown algae Macrocystis integrifolia (Phaeophyceae) under marine intertidal conditions

(2018) Erika Salavarría et al.   3 Biotech

First global transcriptome analysis of brown algae Macrocystis integrifolia (Phaeophyceae) under marine intertidal conditions

(2018) Erika Salavarría et al.   3 Biotech

Seaweed production: overview of the global state of exploitation, farming and emerging research activity

(2017) Alejandro H. Buschmann et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Projected climate changes threaten ancient refugia of kelp forests in the North Atlantic

(2017) Jorge Assis et al.   GLOBAL CHANGE BIOLOGY

Increased temperature and CO2 alleviate photoinhibition in Desmarestia anceps: from transcriptomics to carbon utilization

(2017) Concepción Iñiguez et al.   JOURNAL OF EXPERIMENTAL BOTANY

The role of kelp species as biogenic habitat formers in coastal marine ecosystems

(2017) Harry Teagle et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Molecular Mechanisms for Microbe Recognition and Defense by the Red Seaweed Laurencia dendroidea

(2017) Louisi Souza de Oliveira et al.   mSphere

Fatty acid-related modulations of membrane fluidity in cells: detection and implications

(2016) G. Maulucci et al.   FREE RADICAL RESEARCH

TransRate: reference-free quality assessment of de novo transcriptome assemblies

(2016) Richard Smith-Unna et al.   GENOME RESEARCH

Substantial role of macroalgae in marine carbon sequestration

(2016) Dorte Krause-Jensen et al.   Nature Geoscience

A hierarchical approach to defining marine heatwaves

(2016) Alistair J. Hobday et al.   PROGRESS IN OCEANOGRAPHY

Climate-driven regime shift of a temperate marine ecosystem

(2016) T. Wernberg et al.   SCIENCE

VSEARCH: a versatile open source tool for metagenomics

(2016) Torbjørn Rognes et al.   PeerJ

Temperature tolerance of western Baltic Sea Fucus vesiculosus – growth, photosynthesis and survival

(2015) Angelika Graiff et al.   JOURNAL OF EXPERIMENTAL MARINE BIOLOGY AND ECOLOGY

Temperature and light interactively modulate gene expression inSaccharina latissima(Phaeophyceae)

(2015) Sandra Heinrich et al.   JOURNAL OF PHYCOLOGY

Use of sugar kelp aquaculture in Long Island Sound and the Bronx River Estuary for nutrient extraction

(2015) JK Kim et al.   MARINE ECOLOGY PROGRESS SERIES

Inbreeding Affects Gene Expression Differently in Two Self-IncompatibleArabidopsis lyrataPopulations with Similar Levels of Inbreeding Depression

(2015) Mandy Menzel et al.   MOLECULAR BIOLOGY AND EVOLUTION

Sexual Dimorphism and the Evolution of Sex-Biased Gene Expression in the Brown Alga Ectocarpus

(2015) Agnieszka Lipinska et al.   MOLECULAR BIOLOGY AND EVOLUTION

Genetic mechanisms of abiotic stress tolerance that translate to crop yield stability

(2015) Michael V. Mickelbart et al.   NATURE REVIEWS GENETICS

limma powers differential expression analyses for RNA-sequencing and microarray studies

(2015) Matthew E. Ritchie et al.   NUCLEIC ACIDS RESEARCH

Structural basis for dynamic mechanism of nitrate/nitrite antiport by NarK

(2015) Masahiro Fukuda et al.   Nature Communications

Parallel Gene Expression Differences between Low and High Latitude Populations of Drosophila melanogaster and D. simulans

(2015) Li Zhao et al.   PLoS Genetics

Use of sugar kelp aquaculture in Long Island Sound and the Bronx River Estuary for nutrient extraction

(2015) JK Kim et al.   MARINE ECOLOGY PROGRESS SERIES

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Utilization of crop heterosis: a review

(2014) Donghui Fu et al.   EUPHYTICA

Alteration of Sexual Reproduction and Genetic Diversity in the Kelp Species Laminaria digitata at the Southern Limit of Its Range

(2014) Luz Valeria Oppliger et al.   PLoS One

Assisted Gene Flow to Facilitate Local Adaptation to Climate Change

(2013) Sally N. Aitken et al.   Annual Review of Ecology Evolution and Systematics

Glycerolipids in photosynthesis: Composition, synthesis and trafficking

(2013) Laurence Boudière et al.   BIOCHIMICA ET BIOPHYSICA ACTA-BIOENERGETICS

Are transcriptional responses to inbreeding a functional response to alleviate inbreeding depression?

(2013) Carlos García et al.   FLY

Economic valuation of kelp forests in northern Chile: values of goods and services of the ecosystem

(2013) Julio A. Vásquez et al.   JOURNAL OF APPLIED PHYCOLOGY

Prevailing sea surface temperatures inhibit summer reproduction of the kelpLaminaria digitataat Helgoland (North Sea)

(2013) Inka Bartsch et al.   JOURNAL OF PHYCOLOGY

Climate driven changes in subtidal kelp forest communities in NW Spain

(2013) Sofie E. Voerman et al.   MARINE ENVIRONMENTAL RESEARCH

40S Ribosome Biogenesis Co-Factors Are Essential for Gametophyte and Embryo Development

(2013) Sandra Missbach et al.   PLoS One

Decline in Kelp in West Europe and Climate

(2013) Virginie Raybaud et al.   PLoS One

Investigating the molecular basis of local adaptation to thermal stress: population differences in gene expression across the transcriptome of the copepod Tigriopus californicus

(2012) Sean D Schoville et al.   BMC EVOLUTIONARY BIOLOGY

A comprehensive cDNA library of light- and temperature-stressed Saccharina latissima (Phaeophyceae)

(2012) Sandra Heinrich et al.   EUROPEAN JOURNAL OF PHYCOLOGY

Genetic improvement of macroalgae: status to date and needs for the future

(2012) Nick Robinson et al.   JOURNAL OF APPLIED PHYCOLOGY

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential expression analysis of multifactor RNA-Seq experiments with respect to biological variation

(2012) Davis J. McCarthy et al.   NUCLEIC ACIDS RESEARCH

Transcriptomic Analysis of Acclimation to Temperature and Light Stress in Saccharina latissima (Phaeophyceae)

(2012) Sandra Heinrich et al.   PLoS One

RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome

(2011) Bo Li et al.   BMC BIOINFORMATICS

Peroxiredoxin Functions as a Peroxidase and a Regulator and Sensor of Local Peroxides

(2011) Sue Goo Rhee et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Controlling gene expression in response to stress

(2011) Eulàlia de Nadal et al.   NATURE REVIEWS GENETICS

FragGeneScan: predicting genes in short and error-prone reads

(2010) Mina Rho et al.   NUCLEIC ACIDS RESEARCH

Differential proteomic response to heat stress in thermal Agrostis scabra and heat-sensitive Agrostis stolonifera

(2010) Chenping Xu et al.   PHYSIOLOGIA PLANTARUM

Redox regulation of chlorophyll biosynthesis

(2010) Anne Stenbaek et al.   PHYTOCHEMISTRY

Algal diseases: spotlight on a black box

(2010) Claire M.M. Gachon et al.   TRENDS IN PLANT SCIENCE

edgeR: a Bioconductor package for differential expression analysis of digital gene expression data

(2009) M. D. Robinson et al.   BIOINFORMATICS

Towards domestication of giant kelp (Macrocystis pyrifera) in Chile: selection of haploid parent genotypes, outbreeding, and heterosis

(2009) Renato Westermeier et al.   JOURNAL OF APPLIED PHYCOLOGY

Characterization of mitochondrial dynamics and subcellular localization of ROS reveal that HsfA2 alleviates oxidative damage caused by heat stress in Arabidopsis

(2009) Lingrui Zhang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Quantitative Genomics: Analyzing Intraspecific Variation Using Global Gene Expression Polymorphisms or eQTLs

(2008) Dan Kliebenstein   Annual Review of Plant Biology

Prediction of the heterosis of Laminaria hybrids with the genetic distance between their parental gametophyte clones

(2008) Xiaojie Li et al.   JOURNAL OF APPLIED PHYCOLOGY

Characterization of the endo-β-1,3-glucanase activity of S. cerevisiae Eng2 and other members of the GH81 family

(2007) Ana-Belén Martín-Cuadrado et al.   FUNGAL GENETICS AND BIOLOGY