Inferring Conformational State of Myosin Motor in an Atomic Force Microscopy Image via Flexible Fitting Molecular Simulations

Case Report: Bayesian Statistical Inference of Experimental Parameters via Biomolecular Simulations: Atomic Force Microscopy

(2021) Sotaro Fuchigami et al.   Frontiers in Molecular Biosciences

Rigid-body fitting to atomic force microscopy images for inferring probe shape and biomolecular structure

(2021) Toru Niina et al.   PLoS Computational Biology

Flexible Fitting of Biomolecular Structures to Atomic Force Microscopy Images via Biased Molecular Simulations

(2020) Toru Niina et al.   Journal of Chemical Theory and Computation

Particle Filter Method to Integrate High-Speed Atomic Force Microscopy Measurements with Biomolecular Simulations

(2020) Sotaro Fuchigami et al.   Journal of Chemical Theory and Computation

Reconstruction of low-resolution molecular structures from simulated atomic force microscopy images

(2019) Bhaskar Dasgupta et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

High-speed atomic force microscopy

(2019) Toshio Ando   CURRENT OPINION IN CHEMICAL BIOLOGY

Force Generation by Myosin Motors: A Structural Perspective

(2019) Julien Robert-Paganin et al.   CHEMICAL REVIEWS

Applications of high-speed atomic force microscopy to real-time visualization of dynamic biomolecular processes

(2018) Takayuki Uchihashi et al.   BIOCHIMICA ET BIOPHYSICA ACTA-GENERAL SUBJECTS

Force-producing ADP state of myosin bound to actin

(2016) Sarah F. Wulf et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Filming Biomolecular Processes by High-Speed Atomic Force Microscopy

(2014) Toshio Ando et al.   CHEMICAL REVIEWS

Energy landscape views for interplays among folding, binding, and allostery of calmodulin domains

(2014) W. Li et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

High-Speed AFM and Applications to Biomolecular Systems

(2013) Toshio Ando et al.   Annual Review of Biophysics

Conformational dynamics of individual antibodies using computational docking and AFM

(2013) Rui C. Chaves et al.   JOURNAL OF MOLECULAR RECOGNITION

Temperature-Enhanced Association of Proteins Due to Electrostatic Interaction: A Coarse-Grained Simulation of Actin–Myosin Binding

(2012) Kei-ichi Okazaki et al.   JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

Characterization of the motion of membrane proteins using high-speed atomic force microscopy

(2012) Ignacio Casuso et al.   Nature Nanotechnology

Computational Reconstruction of Multidomain Proteins Using Atomic Force Microscopy Data

(2012) Minh-Hieu Trinh et al.   STRUCTURE

Submolecular-Scale Imaging of α-Helices and C-Terminal Domains of Tubulins by Frequency Modulation Atomic Force Microscopy in Liquid

(2011) Hitoshi Asakawa et al.   BIOPHYSICAL JOURNAL

CafeMol: A Coarse-Grained Biomolecular Simulator for Simulating Proteins at Work

(2011) Hiroo Kenzaki et al.   Journal of Chemical Theory and Computation

Walking to work: roles for class V myosins as cargo transporters

(2011) John A. Hammer et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

High-Speed Atomic Force Microscopy Reveals Rotary Catalysis of Rotorless F1-ATPase

(2011) T. Uchihashi et al.   SCIENCE

Video imaging of walking myosin V by high-speed atomic force microscopy

(2010) Noriyuki Kodera et al.   NATURE

Improved prediction of protein side-chain conformations with SCWRL4

(2009) Georgii G. Krivov et al.   PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS