Article
Microbiology
Anuradha Rao, Adrianna Westbrook, Leda Bassit, Richard Parsons, Eric Fitts, Morgan Greenleaf, Kaleb McLendon, Julie A. Sullivan, William O'Sick, Tyler Baugh, Heather B. Bowers, Filipp Frank, Ethan Wang, Mimi Le, Jennifer Frediani, Pavitra Roychoudhury, Alexander L. Greninger, Robert Jerris, Nira R. Pollock, Eric A. Ortlund, John D. Roback, Wilbur A. Lam, Anne Piantadosi
Summary: This study compared the performance of 10 commercially available RATs against the Delta and Omicron SARS-CoV-2 variants. The RATs exhibited lower sensitivity for Omicron samples when using PCR cycle threshold as the comparator, but exhibited similar sensitivity when using quantitative antigen concentration as the comparator. Additionally, Omicron samples had lower ratios of antigen to RNA, which may explain the lower sensitivity of RATs for that variant.
JOURNAL OF CLINICAL MICROBIOLOGY
(2023)
Article
Multidisciplinary Sciences
Rainer Thell, Verena Kallab, Wolfgang Weinhappel, Wolfgang Mueckstein, Lukas Heschl, Martina Heschl, Stefan Korsatko, Franz Toedling, Amelie Blaschke, Theresa Herzog, Anna Klicpera, Clara Koeller, Moritz Haugk, Anna Kreil, Alexander Spiel, Philipp Kreuzer, Robert Krause, Christian Sebesta, Stefan Winkler, Brenda Laky, Marton Szell
Summary: The study evaluated the performance of a point-of-care antigen rapid test compared to laboratory-based rt-PCR in diagnosing SARS-CoV-2 in symptomatic patients, and found that the rapid test showed good sensitivity when viral load was high.
Article
Virology
Yuko Sakai-Tagawa, Seiya Yamayoshi, Peter J. Halfmann, Nancy Wilson, Max Bobholz, William C. Vuyk, Wanting Wei, Hunter Ries, David H. O'Connor, Thomas C. Friedrich, Emilia M. Sordillo, Harm van Bakel, Viviana Simon, Yoshihiro Kawaoka
Summary: Diagnosis by rapid antigen tests (RATs) is useful for early initiation of antiviral treatment. However, the sensitivity of RATs may be affected by amino acid changes in the N protein, particularly in the Omicron variant and its subvariants.
JOURNAL OF MEDICAL VIROLOGY
(2023)
Article
Biophysics
Dan Liu, Chenhui Ju, Chao Han, Rui Shi, Xuehui Chen, Demin Duan, Jinghua Yan, Xiyun Yan
Summary: The nanozyme-based chemiluminescence paper assay offers a new method for rapid and sensitive detection of SARS-CoV-2 antigen. The test is specific to the SARS-CoV-2 antigen and can be completed within 16 minutes.
BIOSENSORS & BIOELECTRONICS
(2021)
Article
Virology
Paloma Merino-Amador, Patricia Gonzalez-Donapetry, Mercedes Dominguez-Fernandez, Fernando Gonzalez-Romo, Miguel Angel Sanchez-Castellano, Alejandro Seoane-Estevez, Alberto Delgado-Iribarren, Julio Garcia, German Bou, Manuel Cuenca-Estrella, Jesus Oteo-Iglesias
Summary: The Clinitest Rapid COVID-19 Antigen Test showed good clinical performance with a sensitivity of 93.3% and a specificity of 99.2% among individuals with suspected COVID-19. Sensitivity was higher in patients with a shorter duration of symptoms or with a high viral load. The agreement between ClinitestRT and RT-PCR was 96.7%.
JOURNAL OF CLINICAL VIROLOGY
(2021)
Article
Virology
Marco Ciotti, Massimo Maurici, Massimo Pieri, Massimo Andreoni, Sergio Bernardini
Summary: The performance of rapid antigen tests showed lower sensitivity compared to real-time qualitative PCR in cases of SARS-CoV-2 infection, reaffirming PCR as the gold standard for frontline screening due to its higher accuracy.
JOURNAL OF MEDICAL VIROLOGY
(2021)
Article
Virology
Flaminia Olearo, Dominik Noerz, Fabian Heinrich, Jan Peter Sutter, Kevin Roedl, Alexander Schultze, Julian Schulze Zur Wiesch, Platon Braun, Lisa Oestereich, Benno Kreuels, Dominic Wichmann, Martin Aepfelbacher, Susanne Pfefferle, Marc Luetgehetmann
Summary: This study evaluated the analytic performance and handling of four rapid Antigen Point of Care Tests, showing acceptable sensitivity and specificity in high viral load samples but a risk of contamination. Careful consideration is needed before clinical implementation due to lower sensitivity compared to RT-qPCR.
JOURNAL OF CLINICAL VIROLOGY
(2021)
Letter
Immunology
Martin Zacharias, Verena Stangl, Andrea Thuringer, Martina Loibner, Philipp Wurm, Stella Wolfgruber, Kurt Zatloukal, Karl Kashofer, Gregor Gorkiewicz
Summary: Detecting SARS-CoV-2 in deceased patients is crucial for appropriate safety measures during postmortem examinations, and a rapid antigen test can serve as a useful tool for guiding autopsy practices.
EMERGING INFECTIOUS DISEASES
(2021)
Article
Virology
Anna Heydecke, Karolina Gullsby
Summary: During the COVID-19 pandemic, the Roche SARS-CoV-2 Rapid Antigen Test (Ag-RDT) was evaluated for its performance in an emergency care setting. The Ag-RDT's analytical performance was compared to rRT-PCR, and its clinical evaluation included 1911 patients. The Ag-RDT showed a sensitivity of 71.3% and a specificity of 99.7%, with an increased sensitivity of 86.5% when excluding samples with Ct values above 30. The test also shortened the detection time by 11 hours on average.
JOURNAL OF MEDICAL VIROLOGY
(2023)
Article
Virology
Johan Nordgren, Sumit Sharma, Henrik Olsson, Mikael Jamtberg, Tina Falkeborn, Lennart Svensson, Marie Hagbom
Summary: This study evaluated the efficacy of two rapid antigen tests for detecting SARS-CoV-2 infections, with Panbio test showing 100% specificity but lower sensitivity, and Orient gene test having higher sensitivity but lower specificity. The research also revealed that these antigen tests have high sensitivity in detecting samples containing infectious viruses.
JOURNAL OF CLINICAL VIROLOGY
(2021)
Article
Immunology
Zoe M. Lohse, Jerne J. Shapiro, John A. Lednicky, Melanie N. Cash, Inyoung Jun, Carla N. Mavian, Massimiliano S. Tagliamonte, Cyrus Saleem, Yang Yang, Eric J. Nelson, Marco Salemi, Kathleen A. Ryan, J. Glenn Morris
Summary: In this study, 65 longitudinally collected nasal swab samples from 31 children aged 0-16 years, who were positive for severe acute respiratory syndrome coronavirus 2 Omicron BA.1, were screened. By day 7 after symptom onset, 48% of children remained positive according to rapid antigen test. We also found 100% correlation between antigen test results and virus culture in a sample subset.
CLINICAL INFECTIOUS DISEASES
(2023)
Article
Multidisciplinary Sciences
Erica Frew, Douglas Roberts, Shelly Barry, Matthew Holden, Amanda Restell Mand, Emily Mitsock, Enqing Tan, Wei Yu, Johan Skog
Summary: To address the challenges posed by the novel coronavirus, a cost-effective and rapid SARS-CoV-2 antigen test has been developed, capable of identifying the presence of the virus in patient anterior nares swab samples with high sensitivity and no requirement for equipment or laboratory infrastructure.
SCIENTIFIC REPORTS
(2021)
Article
Medicine, General & Internal
Vicente Martin-Sanchez, Tania Fernandez-Villa, Ana Carvajal Uruena, Ana Rivero Rodriguez, Sofia Reguero Celada, Gloria Sanchez Antolin, Jose Pedro Fernandez-Vazquez
Summary: This study evaluated population-based screening of asymptomatic individuals using a rapid antigen diagnostic test in areas of high transmission. The study found high specificity and predictive values, with good screening performance even in regions with infection prevalence below 2%.
JOURNAL OF CLINICAL MEDICINE
(2021)
Article
Infectious Diseases
Johannes G. M. Koeleman, Henk Brand, Stijn J. de Man, David S. Y. Ong
Summary: RT-qPCR is the gold standard for diagnosing acute COVID-19 infections, but rapid antigen tests can provide quicker results. Different rapid antigen tests have varying levels of sensitivity and specificity, with the Romed test showing good clinical performance in patients with high viral loads.
EUROPEAN JOURNAL OF CLINICAL MICROBIOLOGY & INFECTIOUS DISEASES
(2021)
Article
Infectious Diseases
Emily Layer, Sebastian Hoehl, Marek Widera, Denisa Bojkova, Tim Westphal, Rene Gottschalk, Boris Boeddinghaus, Joscha Schork, Sandra Ciesek, Udo Goetsch
Summary: This study evaluated the sensitivity and specificity of rapid antigen testing for detecting infectivity in travelers with SARS-CoV-2. The results showed that testing with rapid antigen tests on the 5th day after arrival can reliably identify infectious travelers. No cases were found where negative travelers tested positive during the follow-up.
INTERNATIONAL JOURNAL OF INFECTIOUS DISEASES
(2022)
Article
Public, Environmental & Occupational Health
Daniel Camprubi-Ferrer, Ludovico Cobuccio, Steven Van den Broucke, Blaise Genton, Emmanuel Bottieau, Valerie D'Acremont, Natalia Rodriguez-Valero, Alex Almuedo-Riera, Leire Balerdi-Sarasola, Carme Subira, Marc Fernandez-Pardos, Miguel J. Martinez, Jessica Navero-Castillejos, Isabel Vera, Jara Llenas-Garcia, Camilla Rothe, Daniel Cadar, Marjan Van Esbroeck, Nikki Foque, Jose Munoz
Summary: This study highlights the challenges in diagnosing febrile illnesses in returning travelers, particularly those without focal symptoms. The majority of fever cases in travelers were categorized as acute undifferentiated febrile illnesses (AUFI) and had longer duration of fever, higher hospitalization rates, and ICU admissions. Arboviruses, especially dengue, were the most common cause of AUFI, followed by malaria and bacterial infections. About 29.9% of AUFI patients remained undiagnosed after one month of follow-up using standard diagnostic methods.
JOURNAL OF TRAVEL MEDICINE
(2022)
Correction
Multidisciplinary Sciences
Daniel Camprubi, Alex Almuedo-Riera, Helena Marti-Soler, Alex Soriano, Juan Carlos Hurtado, Carme Subira, Berta Grau-Pujol, Alejandro Krolewiecki, Jose Munoz
Letter
Infectious Diseases
Tommaso Francesco Aiello, Pedro Puerta-Alcalde, Mariana Chumbita, Patricia Monzo, Carlos Lopera, Juan Carlos Hurtado, Fernanda Meira, Mar Mosquera, Marta Santos, Mariana Fernandez-Pittol, Josep Mensa, Jose Antonio Martinez, Alex Soriano, Ma Angeles Marcos, Carolina Garcia-Vidal
JOURNAL OF INFECTION
(2022)
Article
Public, Environmental & Occupational Health
Daniel Camprubi-Ferrer, Jose Antonio Oteo, Emmanuel Bottieau, Blaise Genton, Leire Balerdi-Sarasola, Aranzazu Portillo, Ludovico Cobuccio, Steven Van den Broucke, Sonia Santibanez, Daniel Cadar, Natalia Rodriguez-Valero, Alex Almuedo-Riera, Carme Subira, Valerie d'Acremont, Miguel J. Martinez, Montserrat Roldan, Jessica Navero-Castillejos, Marjan Van Esbroeck, Jose Munoz
Summary: Diagnosis and treatment of undifferentiated non-malaria fevers (NMF) in returning travellers is a challenging task. This study aims to explore the prevalence and predictive factors of NMF in returning travellers and to investigate the effectiveness of doxycycline as an empirical treatment option.
JOURNAL OF TRAVEL MEDICINE
(2023)
Article
Immunology
Rodrigo Alonso-Navarro, Genoveva Cuesta, Marta Santos, Celia Cardozo, Veronica Rico, Nicole Garcia-Pouton, Montse Tuset, Marta Bodro, Laura Morata, Pedro Puerta-Alcalde, Sabina Herrera, Dafne Soria, Marta Aldea, Josep Mensa, Jose Antonio Martinez, Ana Del Rio, Jordi Vila, Felipe Garcia, Carolina Garcia-Vidal, M. Angeles Marcos, Alex Soriano
Summary: A prospective study found that negative subgenomic RNA (sgRNA) at admission or after 5 days of remdesivir therapy was associated with better outcomes in hospitalized patients with moderate/severe COVID-19. Monitoring sgRNA levels could be useful in assessing the response to antiviral treatment.
CLINICAL INFECTIOUS DISEASES
(2023)
Article
Immunology
Berta Fidalgo, Laura Morata, Celia Cardozo, Ana del Rio, Javier Morales, Mariana Fernandez-Pittol, Jose Antonio Martinez, Josep Mensa, Jordi Vila, Alex Soriano, Climent Casals-Pascual
Summary: Rapid reporting of actionable microbiological results is critical for patient management, and delays in reporting this information to infectious diseases specialists are associated with an increased odds of death.
CLINICAL INFECTIOUS DISEASES
(2023)
Article
Public, Environmental & Occupational Health
Daniel Camprubi-Ferrer, Ludovico Cobuccio, Steven Van Den Broucke, Leire Balerdi-Sarasola, Blaise Genton, Emmanuel Bottieau, Jessica Navero-Castillejos, Miguel J. Martinez, Corinne Jay, Anne Grange, Stephanie Borland, Mike Vaughn, Natalia Rodriguez-Valero, Alex Almuedo-Riera, Valerie D'Acremont, Carme Subira, Tessa de Alba, Angeline Cruz, Marjan Van Esbroeck, Crystal Smith, Ashley Hillman, Brandon Hanberg, Rob Trauscht, Nerissa Spampanato, Jose Munoz
Summary: This study evaluated a prototype panel of a multiplex nucleic acid amplification test (NAAT) in detecting different relevant pathogens in returning travelers with fever. The results showed that the prototype panel had high sensitivity and specificity in diagnosing malaria, dengue, and chikungunya, but had lower sensitivity for Zika virus and other important travel-related bacterial infections.
JOURNAL OF TRAVEL MEDICINE
(2023)
Article
Infectious Diseases
Patricia Monzo-Gallo, Mariana Chumbita, Carlos Lopera, Tommaso Francesco Aiello, Oliver Peyrony, Marta Bodro, Sabina Herrera, Abiu Sempere, Mariana Fernandez-Pittol, Genoveva Cuesta, Silvia Simo, Mariana Benegas, Claudia Fortuny, Josep Mensa, Alex Soriano, Pedro Puerta-Alcalde, Francesc Marco, Carolina Garcia-Vidal
Summary: We conducted a retrospective observational study to describe the epidemiology of invasive fungal infections (IFIs) and outcomes in hospitalized patients. A total of 367 IFIs were diagnosed, with candidemia and invasive aspergillosis being the most common types. Corticosteroid use and prior viral infection were identified as the main risk factors. The overall mortality rate at 12 weeks was 32.2%.
Article
Genetics & Heredity
Gibraan Rahman, Daniel McDonald, Antonio Gonzalez, Yoshiki Vazquez-Baeza, Lingjing Jiang, Climent Casals-Pascual, Daniel Hakim, Amanda Hazel Dilmore, Brent Nowinski, Shyamal Peddada, Rob Knight
Summary: In this study, we introduce a tool called Evident that allows researchers to calculate effect sizes for various metadata variables in order to determine the power of a new study. Evident can be used to analyze existing large-scale microbiome databases and calculate effect sizes for different measures of microbiome analysis. We demonstrate the importance of effect size and power analysis in computational microbiome analysis and provide an example of how Evident can be used for efficient analyses using a dataset of thousands of samples and multiple metadata categories.
Article
Microbiology
Lucia Boix-Palop, Andrea Vergara, Emma Padilla, Diego Martinez, Ana Blanco, Josefa Perez, Esther Calbo, Jordi Vila, Climent Casals-Pascual
Summary: The aim of this study was to evaluate the diagnostic performance of plasma Lipocalin-2 (LCN2) concentration in adult patients with community-acquired pneumonia (CAP) and its association with etiology, severity, and prognosis. The study found that LCN2 concentration was higher in bacterial CAP compared to non-bacterial CAP and had a limited ability to distinguish between the two. It also found that LCN2 concentration was associated with disease severity in adult patients with CAP. However, its utility as a biomarker to discriminate between viral and bacterial etiology in CAP is limited.
Review
Infectious Diseases
Lourrany Borges Costa, Francisca Kalline de Almeida Barreto, Marina Carvalho Arruda Barreto, Thyago Henrique Pereira dos Santos, Maria de Margarette Oliveira de Andrade, Luis Arthur Brasil Gadelha Farias, Andre Ricardo Ribas de Freitas, Miguel Julian Martinez, Luciano Pamplona de Goes Cavalcanti
Summary: This article reviews the global epidemiological and economic burden of Chikungunya, a re-emerging viral infection. Chikungunya is widely distributed in tropical and subtropical areas and co-circulates with other arboviruses. Infection can lead to chronic joint manifestations and have a significant impact on quality of life and the economy.
TROPICAL MEDICINE AND INFECTIOUS DISEASE
(2023)
Article
Infectious Diseases
Carles Garcia-Cervera, Simona Mihaela Iftimie, Miguel J. Martinez, Ana Vazquez Gonzalez, Sandra Parra-Perez, Laia Revuelta-Lopez-Cordon, Joan Gil-Toral, Rosa Merce Vileu Vallverdu, Ana Martinez Mateo, Ana Felisa Lopez-Azcona, Isabel Pujol-Bajador, Frederic Ballester-Bastardie, Antoni Castro-Salomo
Summary: This article reports on the first two cases of encephalitis caused by the West Nile virus (WNV) diagnosed in Catalonia, Spain. The patients, an elderly couple, presented with clinical and biological signs consistent with viral encephalitis. Laboratory tests confirmed WNV infection in their serum and cerebrospinal fluid samples.
INFECTIOUS DISEASES
(2023)
Article
Medical Informatics
Heather R. Jackson, Judith Zandstra, Stephanie Menikou, Melissa Shea Hamilton, Andrew J. Mcardle, Roman Fischer, Adam M. Thorne, Honglei Huang, Michael W. Tanck, Machiel H. Jansen, Tisham De, Philipp K. A. Agyeman, Ulrich Von Both, Enitan Carrol, Marieke Emonts, Irini Eleftheriou, Michiel van der Flier, Colin Fink, Jolein Gloerich, Ronald De Groot, Henriette A. Moll, Marko Pokorn, Andrew J. Pollard, Luregn J. Schlapbach, Maria N. Tsolia, Effua Usuf, Victoria J. Wright, Shunmay Yeung, Dace Zavadska, Werner Zenz, Lachlan J. M. Coin, Climent Casals-Pascual, Aubrey J. Cunnington, Federico Martinon-Torres, Jethro A. Herberg, Marien de Jonge, Michael Levin, Taco W. Kuijpers, Myrsini Kaforou
Summary: Through a multi-center study, we have identified protein biomarkers that may be developed into a blood-based point-of-care diagnostic test for rapidly distinguishing bacterial and viral infections in febrile children. This study provides a potential useful tool for improving the treatment of febrile children.
LANCET DIGITAL HEALTH
(2023)
Article
Infectious Diseases
Deborah N. Melo, Giovanna R. P. Lima, Carolina G. Fernandes, Andre C. Teixeira, Joel B. Filho, Fernanda M. C. Araujo, Lia C. Araujo, Andre M. Siqueira, Luis A. B. G. Farias, Renata A. A. Monteiro, Jaume Ordi, Miguel J. Martinez, Paulo H. N. Saldiva, Luciano P. G. Cavalcanti
Summary: This study reports the first case of using minimally invasive autopsy to confirm severe dengue as the cause of death in a pediatric patient. The patient, a previously healthy 10-year-old girl, presented with fever, headache, abdominal pain, diarrhea, and vomiting during the COVID-19 pandemic. Clinical, pathological, and laboratory findings confirmed complications of severe dengue as the cause of death.
TROPICAL MEDICINE AND INFECTIOUS DISEASE
(2022)