Droplet-microfluidics-assisted sequencing of HIV proviruses and their integration sites in cells from people on antiretroviral therapy
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Title
Droplet-microfluidics-assisted sequencing of HIV proviruses and their integration sites in cells from people on antiretroviral therapy
Authors
Keywords
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Journal
Nature Biomedical Engineering
Volume -, Issue -, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-03-29
DOI
10.1038/s41551-022-00864-8
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Note: Only part of the references are listed.- Single-cell transcriptional landscapes reveal HIV-1–driven aberrant host gene transcription as a potential therapeutic target
- (2020) Runxia Liu et al. Science Translational Medicine
- A quantitative approach for measuring the reservoir of latent HIV-1 proviruses
- (2019) Katherine M. Bruner et al. NATURE
- Intact HIV-1 proviruses accumulate at distinct chromosomal positions during prolonged antiretroviral therapy
- (2019) Kevin B. Einkauf et al. JOURNAL OF CLINICAL INVESTIGATION
- Combined HIV-1 sequence and integration site analysis informs viral dynamics and allows reconstruction of replicating viral ancestors
- (2019) Sean C. Patro et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- HIV integration sites and implications for maintenance of the reservoir
- (2018) Jori Symons et al. Current Opinion in HIV and AIDS
- Conflicting evidence for HIV enrichment in CD32+ CD4 T cells
- (2018) Liliana Pérez et al. NATURE
- Clonal Expansion of Human Immunodeficiency Virus–Infected Cells and Human Immunodeficiency Virus Persistence During Antiretroviral Therapy
- (2017) James I. Mullins et al. JOURNAL OF INFECTIOUS DISEASES
- Finding a helix in a haystack: nucleic acid cytometry with droplet microfluidics
- (2017) Iain C. Clark et al. LAB ON A CHIP
- Single-cell genome sequencing at ultra-high-throughput with microfluidic droplet barcoding
- (2017) Freeman Lan et al. NATURE BIOTECHNOLOGY
- Single-cell analysis of HIV-1 transcriptional activity reveals expression of proviruses in expanded clones during ART
- (2017) Ann Wiegand et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
- Error rates, PCR recombination, and sampling depth in HIV-1 whole genome deep sequencing
- (2017) Fabio Zanini et al. VIRUS RESEARCH
- Identification of Genetically Intact HIV-1 Proviruses in Specific CD4 + T Cells from Effectively Treated Participants
- (2017) Bonnie Hiener et al. Cell Reports
- Proviruses with identical sequences comprise a large fraction of the replication-competent HIV reservoir
- (2017) John K. Bui et al. PLoS Pathogens
- Distribution and fate of HIV-1 unintegrated DNA species: a comprehensive update
- (2017) Faysal Bin Hamid et al. AIDS Research and Therapy
- Single-Cell Characterization of Viral Translation-Competent Reservoirs in HIV-Infected Individuals
- (2016) Amy E. Baxter et al. Cell Host & Microbe
- Measuring the latent reservoir in vivo
- (2016) Marta Massanella et al. JOURNAL OF CLINICAL INVESTIGATION
- Persistent HIV-1 replication maintains the tissue reservoir during therapy
- (2016) Ramon Lorenzo-Redondo et al. NATURE
- Defective proviruses rapidly accumulate during acute HIV-1 infection
- (2016) Katherine M Bruner et al. NATURE MEDICINE
- Whole-Genome Sequencing of a Single Viral Species from a Highly Heterogeneous Sample
- (2015) Hee-Sun Han et al. ANGEWANDTE CHEMIE-INTERNATIONAL EDITION
- HIV-1 Integration Landscape during Latent and Active Infection
- (2015) Lillian B. Cohn et al. CELL
- Calibrating genomic and allelic coverage bias in single-cell sequencing
- (2015) Cheng-Zhong Zhang et al. Nature Communications
- PCR-Activated Cell Sorting for Cultivation-Free Enrichment and Sequencing of Rare Microbes
- (2015) Shaun W. Lim et al. PLoS One
- HIV infection: epidemiology, pathogenesis, treatment, and prevention
- (2014) Gary Maartens et al. LANCET
- Proliferation of cells with HIV integrated into cancer genes contributes to persistent infection
- (2014) T. A. Wagner et al. SCIENCE
- Specific HIV integration sites are linked to clonal expansion and persistence of infected cells
- (2014) F. Maldarelli et al. SCIENCE
- Thirty Years of HIV and AIDS: Future Challenges and Opportunities
- (2013) Carl W. Dieffenbach et al. ANNALS OF INTERNAL MEDICINE
- QUAST: quality assessment tool for genome assemblies
- (2013) Alexey Gurevich et al. BIOINFORMATICS
- Next-Generation Sequencing of HIV-1 RNA Genomes: Determination of Error Rates and Minimizing Artificial Recombination
- (2013) Francesca Di Giallonardo et al. PLoS One
- Calcium/Calcineurin Synergizes with Prostratin to Promote NF-κB Dependent Activation of Latent HIV
- (2013) Jonathan K. Chan et al. PLoS One
- HIV Latency
- (2013) R. F. Siliciano et al. Cold Spring Harbor Perspectives in Medicine
- Universal Amplification, Next-Generation Sequencing, and Assembly of HIV-1 Genomes
- (2012) A. Gall et al. JOURNAL OF CLINICAL MICROBIOLOGY
- SPAdes: A New Genome Assembly Algorithm and Its Applications to Single-Cell Sequencing
- (2012) Anton Bankevich et al. JOURNAL OF COMPUTATIONAL BIOLOGY
- An Increasing Proportion of Monotypic HIV-1 DNA Sequences during Antiretroviral Treatment Suggests Proliferation of HIV-Infected Cells
- (2012) Thor A. Wagner et al. JOURNAL OF VIROLOGY
- Fast gapped-read alignment with Bowtie 2
- (2012) Ben Langmead et al. NATURE METHODS
- DIVEIN: a web server to analyze phylogenies, sequence divergence, diversity, and informative sites
- (2010) Wenjie Deng et al. BIOTECHNIQUES
- Rapid, low-input, low-bias construction of shotgun fragment libraries by high-density in vitro transposition
- (2010) Andrew Adey et al. GENOME BIOLOGY
- The Sequence Alignment/Map format and SAMtools
- (2009) H. Li et al. BIOINFORMATICS
- Transcriptional Interference Antagonizes Proviral Gene Expression to Promote HIV Latency
- (2008) Tina Lenasi et al. Cell Host & Microbe
- Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
- (2008) B. F. Keele et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
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