A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients
Published 2022 View Full Article
- Home
- Publications
- Publication Search
- Publication Details
Title
A compilation of fecal microbiome shotgun metagenomics from hematopoietic cell transplantation patients
Authors
Keywords
-
Journal
Scientific Data
Volume 9, Issue 1, Pages -
Publisher
Springer Science and Business Media LLC
Online
2022-05-18
DOI
10.1038/s41597-022-01302-9
References
Ask authors/readers for more resources
Related references
Note: Only part of the references are listed.- inStrain profiles population microdiversity from metagenomic data and sensitively detects shared microbial strains
- (2021) Matthew R. Olm et al. NATURE BIOTECHNOLOGY
- Compilation of longitudinal microbiota data and hospitalome from hematopoietic cell transplantation patients
- (2021) Chen Liao et al. Scientific Data
- Conventional myelosuppressive chemotherapy for non-haematological malignancy disrupts the intestinal microbiome
- (2021) Lito E. Papanicolas et al. BMC CANCER
- The gutSMASH web server: automated identification of primary metabolic gene clusters from the gut microbiota
- (2021) Victòria Pascal Andreu et al. NUCLEIC ACIDS RESEARCH
- Does Day-to-Day Variability in Stool Consistency Link to the Fecal Microbiota Composition?
- (2021) Lisa Vork et al. Frontiers in Cellular and Infection Microbiology
- Compositional flux within the intestinal microbiota and risk for bloodstream infection with gram-negative bacteria
- (2020) Igor Stoma et al. CLINICAL INFECTIOUS DISEASES
- High-resolution mycobiota analysis reveals dynamic intestinal translocation preceding invasive candidiasis
- (2020) Bing Zhai et al. NATURE MEDICINE
- Microbiota as Predictor of Mortality in Allogeneic Hematopoietic-Cell Transplantation
- (2020) Jonathan U. Peled et al. NEW ENGLAND JOURNAL OF MEDICINE
- The microbe-derived short-chain fatty acids butyrate and propionate are associated with protection from chronic GVHD
- (2020) Kate A. Markey et al. BLOOD
- The gut microbiota is associated with immune cell dynamics in humans
- (2020) Jonas Schluter et al. NATURE
- Metage2Metabo, microbiota-scale metabolic complementarity for the identication of key species
- (2020) Arnaud Belcour et al. eLife
- Diversification and evolution of vancomycin-resistant Enterococcus faecium during intestinal domination.
- (2019) Krista A. Dubin et al. INFECTION AND IMMUNITY
- The Integrative Human Microbiome Project
- (2019) NATURE
- Antibiotic-induced shifts in fecal microbiota density and composition during hematopoietic stem cell transplantation
- (2019) Sejal Morjaria et al. INFECTION AND IMMUNITY
- MetaBAT 2: an adaptive binning algorithm for robust and efficient genome reconstruction from metagenome assemblies
- (2019) Dongwan D. Kang et al. PeerJ
- Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom
- (2019) Brent Nowinski et al. Scientific Data
- Lactose drives Enterococcus expansion to promote graft-versus-host disease
- (2019) C. K. Stein-Thoeringer et al. SCIENCE
- Inhibition of histone deacetylase 1 (HDAC1) and HDAC2 enhances CRISPR/Cas9 genome editing
- (2019) Bin Liu et al. NUCLEIC ACIDS RESEARCH
- Best practices for analysing microbiomes
- (2018) Rob Knight et al. NATURE REVIEWS MICROBIOLOGY
- Recovery of genomes from metagenomes via a dereplication, aggregation and scoring strategy
- (2018) Christian M. K. Sieber et al. Nature Microbiology
- Rapid and precise alignment of raw reads against redundant databases with KMA
- (2018) Philip T. L. C. Clausen et al. BMC BIOINFORMATICS
- Reconstitution of the gut microbiota of antibiotic-treated patients by autologous fecal microbiota transplant
- (2018) Ying Taur et al. Science Translational Medicine
- VFDB 2019: a comparative pathogenomic platform with an interactive web interface
- (2018) Bo Liu et al. NUCLEIC ACIDS RESEARCH
- Evaluating the Information Content of Shallow Shotgun Metagenomics
- (2018) Benjamin Hillmann et al. mSystems
- metaSPAdes: a new versatile metagenomic assembler
- (2017) Sergey Nurk et al. GENOME RESEARCH
- Intestinal Microbiota and Relapse After Hematopoietic-Cell Transplantation
- (2017) Jonathan U. Peled et al. JOURNAL OF CLINICAL ONCOLOGY
- Strain profiling and epidemiology of bacterial species from metagenomic sequencing
- (2017) Davide Albanese et al. Nature Communications
- Increased GVHD-related mortality with broad-spectrum antibiotic use after allogeneic hematopoietic stem cell transplantation in human patients and mice
- (2016) Yusuke Shono et al. Science Translational Medicine
- MaxBin 2.0: an automated binning algorithm to recover genomes from multiple metagenomic datasets
- (2015) Yu-Wei Wu et al. BIOINFORMATICS
- Intestinal Blautia Is Associated with Reduced Death from Graft-versus-Host Disease
- (2015) Robert R. Jenq et al. BIOLOGY OF BLOOD AND MARROW TRANSPLANTATION
- An Integrative View of Microbiome-Host Interactions in Inflammatory Bowel Diseases
- (2015) Marta Wlodarska et al. Cell Host & Microbe
- Stool consistency is strongly associated with gut microbiota richness and composition, enterotypes and bacterial growth rates
- (2015) Doris Vandeputte et al. GUT
- Impact of peri-transplant vancomycin and fluoroquinolone administration on rates of bacteremia in allogeneic hematopoietic stem cell transplant (HSCT) recipients: A 12-year single institution study
- (2014) Susan K. Seo et al. JOURNAL OF INFECTION
- Binning metagenomic contigs by coverage and composition
- (2014) Johannes Alneberg et al. NATURE METHODS
- Diet rapidly and reproducibly alters the human gut microbiome
- (2013) Lawrence A. David et al. NATURE
- The Variability of the 16S rRNA Gene in Bacterial Genomes and Its Consequences for Bacterial Community Analyses
- (2013) Tomáš Větrovský et al. PLoS One
- Intestinal Domination and the Risk of Bacteremia in Patients Undergoing Allogeneic Hematopoietic Stem Cell Transplantation
- (2012) Ying Taur et al. CLINICAL INFECTIOUS DISEASES
- Metabolic Reconstruction for Metagenomic Data and Its Application to the Human Microbiome
- (2012) Sahar Abubucker et al. PLoS Computational Biology
- Shifting the balance: antibiotic effects on host–microbiota mutualism
- (2011) Benjamin P. Willing et al. NATURE REVIEWS MICROBIOLOGY
- Gut microbiome-host interactions in health and disease
- (2011) James M Kinross et al. Genome Medicine
- Vancomycin-resistant Enterococcus domination of intestinal microbiota is enabled by antibiotic treatment in mice and precedes bloodstream invasion in humans
- (2010) Carles Ubeda et al. JOURNAL OF CLINICAL INVESTIGATION
- A human gut microbial gene catalogue established by metagenomic sequencing
- (2010) Junjie Qin et al. NATURE
- Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation
- (2010) L. Dethlefsen et al. PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
Find Funding. Review Successful Grants.
Explore over 25,000 new funding opportunities and over 6,000,000 successful grants.
ExploreDiscover Peeref hubs
Discuss science. Find collaborators. Network.
Join a conversation