UALCAN: An update to the integrated cancer data analysis platform

Mass-spectrometry-based proteomic correlates of grade and stage reveal pathways and kinases associated with aggressive human cancers

(2021) Diana Monsivais et al.   ONCOGENE

Grading Evolution and Contemporary Prognostic Biomarkers of Clinically Significant Prostate Cancer

(2021) Konrad Sopyllo et al.   Cancers

Review of biomarker systems as an alternative for early diagnosis of ovarian carcinoma

(2021) A. Srivastava et al.   Clinical & Translational Oncology

PHF19 mediated regulation of proliferation and invasiveness in prostate cancer cells

(2020) Payal Jain et al.   eLife

Blood-derived molecular signatures as biomarker panels for the early detection of colorectal cancer

(2020) Xia Gan et al.   MOLECULAR BIOLOGY REPORTS

Pan-cancer molecular subtypes revealed by mass-spectrometry-based proteomic characterization of more than 500 human cancers

(2019) Fengju Chen et al.   Nature Communications

Enhancer transcription reveals subtype-specific gene expression programs controlling breast cancer pathogenesis

(2017) Hector L. Franco et al.   GENOME RESEARCH

ERF mutations reveal a balance of ETS factors controlling prostate oncogenesis

(2017) Rohit Bose et al.   NATURE

UALCAN: A Portal for Facilitating Tumor Subgroup Gene Expression and Survival Analyses

(2017) Darshan S. Chandrashekar et al.   NEOPLASIA

Crosstalk between androgen and pro-inflammatory signaling remodels androgen receptor and NF-κB cistrome to reprogram the prostate cancer cell transcriptome

(2016) Marjo Malinen et al.   NUCLEIC ACIDS RESEARCH

deepTools2: a next generation web server for deep-sequencing data analysis

(2016) Fidel Ramírez et al.   NUCLEIC ACIDS RESEARCH

An Interaction with Ewing’s Sarcoma Breakpoint Protein EWS Defines a Specific Oncogenic Mechanism of ETS Factors Rearranged in Prostate Cancer

(2016) Vivekananda Kedage et al.   Cell Reports

LncReg: a reference resource for lncRNA-associated regulatory networks

(2015) Zhong Zhou et al.   Database-The Journal of Biological Databases and Curation

Predicting effective microRNA target sites in mammalian mRNAs

(2015) Vikram Agarwal et al.   eLife

Therapeutic targeting of BET bromodomain proteins in castration-resistant prostate cancer

(2014) Irfan A. Asangani et al.   NATURE

TCGA-Assembler: open-source software for retrieving and processing TCGA data

(2014) Yitan Zhu et al.   NATURE METHODS

LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression

(2014) Qinghua Jiang et al.   NUCLEIC ACIDS RESEARCH

EZH2 Oncogenic Activity in Castration-Resistant Prostate Cancer Cells Is Polycomb-Independent

(2012) K. Xu et al.   SCIENCE

Fast and accurate short read alignment with Burrows-Wheeler transform

(2009) H. Li et al.   BIOINFORMATICS

miRDB: A microRNA target prediction and functional annotation database with a wiki interface

(2008) X. Wang   RNA

Model-based Analysis of ChIP-Seq (MACS)

(2008) Yong Zhang et al.   GENOME BIOLOGY