Thermal stability and unfolding pathways of hyperthermophilic and mesophilic periplasmic binding proteins studied by molecular dynamics simulation

Quality Matters: Extension of Clusters of Residues with Good Hydrophobic Contacts Stabilize (Hyper)Thermophilic Proteins

(2014) Prakash Chandra Rathi et al.   Journal of Chemical Information and Modeling

The entropic nature of protein thermal stabilization

(2013) Nikolay N. Khechinashvili et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

A study of the structural properties and thermal stability of human Bcl-2 by molecular dynamics simulations

(2013) Ian Ilizaliturri-Flores et al.   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Influence of C-terminal tail deletion on structure and stability of hyperthermophile Sulfolobus tokodaii RNase HI

(2013) Lin Chen et al.   JOURNAL OF MOLECULAR MODELING

Role of Hydrophobic Core on the Thermal Stability of Proteins—Molecular Dynamics Simulations on a Single Point Mutant of Sso7d

(2012) U. Deva Priyakumar   JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS

Cavities determine the pressure unfolding of proteins

(2012) J. Roche et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Essential dynamics: foundation and applications

(2012) Isabella Daidone et al.   Wiley Interdisciplinary Reviews-Computational Molecular Science

An analysis of temperature adaptation in cold active, mesophilic and thermophilic Bacillus α-amylases

(2011) Atiyeh Mahdavi et al.   INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES

Using Molecular Dynamics To Probe the Structural Basis for Enhanced Stability in Thermal Stable Cytochromes P450

(2010) Yergalem T. Meharenna et al.   BIOCHEMISTRY

Structural and Energetic Determinants of Thermal Stability and Hierarchical Unfolding Pathways of Hyperthermophilic Proteins, Sac7d and Sso7d

(2010) U. Deva Priyakumar et al.   JOURNAL OF PHYSICAL CHEMISTRY B

Mechanics and dynamics of B1 domain of protein G: Role of packing and surface hydrophobic residues

(2010) Marc A. Ceruso et al.   PROTEIN SCIENCE

Structural adaptation of the subunit interface of oligomeric thermophilic and hyperthermophilic enzymes

(2008) Elisa Maugini et al.   COMPUTATIONAL BIOLOGY AND CHEMISTRY

GROMACS 4:  Algorithms for Highly Efficient, Load-Balanced, and Scalable Molecular Simulation

(2008) Berk Hess et al.   Journal of Chemical Theory and Computation

Ligand-induced conformational changes in a thermophilic ribose-binding protein

(2008) Matthew J Cuneo et al.   BMC STRUCTURAL BIOLOGY

Thermostability of Salt Bridges versus Hydrophobic Interactions in Proteins Probed by Statistical Potentials

(2007) Benjamin Folch et al.   Journal of Chemical Information and Modeling