Aneuploidy influences the gene expression profiles in Saccharomyces pastorianus group I and II strains during fermentation

Transcriptional profile of the industrial hybrid Saccharomyces pastorianus reveals temperature-dependent allele expression bias and preferential orthologous protein assemblies

(2021) Soukaina Timouma et al.   MOLECULAR BIOLOGY AND EVOLUTION

Postglacial migration shaped the genomic diversity and global distribution of the wild ancestor of lager-brewing hybrids

(2020) Quinn K. Langdon et al.   PLoS Genetics

Physiological and transcriptomic response of Saccharomyces pastorianus to cold storage

(2019) Abhishek Somani et al.   FEMS YEAST RESEARCH

The landscape of genomic copy number alterations in colorectal cancer and their consequences on gene expression levels and disease outcome

(2019) Thomas Ried et al.   MOLECULAR ASPECTS OF MEDICINE

Chromosome level assembly and comparative genome analysis confirm lager-brewing yeasts originated from a single hybridization

(2019) Alex N. Salazar et al.   BMC GENOMICS

Phylogeography of the wild Lager-brewing ancestor (Saccharomyces eubayanus ) in Patagonia

(2018) Juan I. Eizaguirre et al.   ENVIRONMENTAL MICROBIOLOGY

Targeted metagenomics approach to capture the biodiversity of Saccharomyces genus in wild environments

(2018) Haya F. Alsammar et al.   Environmental Microbiology Reports

Inheritance of brewing-relevant phenotypes in constructed Saccharomyces cerevisiae × Saccharomyces eubayanus hybrids

(2017) Kristoffer Krogerus et al.   Microbial Cell Factories

The hybrid genomes of Saccharomyces pastorianus : A current perspective

(2017) Chandre Monerawela et al.   YEAST

Complex Ancestries of Lager-Brewing Hybrids Were Shaped by Standing Variation in the Wild Yeast Saccharomyces eubayanus

(2016) David Peris et al.   PLoS Genetics

No current evidence for widespread dosage compensation in S. cerevisiae

(2016) Eduardo M Torres et al.   eLife

Chromosomal Copy Number Variation in Saccharomyces pastorianus Is Evidence for Extensive Genome Dynamics in Industrial Lager Brewing Strains

(2015) M. van den Broek et al.   APPLIED AND ENVIRONMENTAL MICROBIOLOGY

Loss of lager specific genes and subtelomeric regions define two different Saccharomyces cerevisiae lineages for Saccharomyces pastorianus Group I and II strains

(2015) Chandre Monerawela et al.   FEMS YEAST RESEARCH

Evidence for a Far East Asian origin of lager beer yeast

(2014) Jian Bing et al.   CURRENT BIOLOGY

Lager Yeast Comes of Age

(2014) Jürgen Wendland   EUKARYOTIC CELL

Comparative proteome and transcriptome analysis of lager brewer's yeast in the autolysis process

(2014) Weina Xu et al.   FEMS YEAST RESEARCH

Sequencing and Characterisation of Rearrangements in Three S. pastorianus Strains Reveals the Presence of Chimeric Genes and Gives Evidence of Breakpoint Reuse

(2014) Sarah K. Hewitt et al.   PLoS One

Genome Sequence of Saccharomyces carlsbergensis , the World’s First Pure Culture Lager Yeast

(2014) Andrea Walther et al.   G3-Genes Genomes Genetics

featureCounts: an efficient general purpose program for assigning sequence reads to genomic features

(2013) Y. Liao et al.   BIOINFORMATICS

Gene Expression Is Circular: Factors for mRNA Degradation Also Foster mRNA Synthesis

(2013) Gal Haimovich et al.   CELL

Global Analysis of Eukaryotic mRNA Degradation Reveals Xrn1-Dependent Buffering of Transcript Levels

(2013) Mai Sun et al.   MOLECULAR CELL

Comparative physiology and fermentation performance of Saaz and Frohberg lager yeast strains and the parental speciesSaccharomyces eubayanus

(2013) Brian R. Gibson et al.   YEAST

Chimeric Protein Complexes in Hybrid Species Generate Novel Phenotypes

(2013) Elzbieta M. Piatkowska et al.   PLoS Genetics

STAR: ultrafast universal RNA-seq aligner

(2012) Alexander Dobin et al.   BIOINFORMATICS

Characterization of the Saccharomyces bayanus-type AGT1 transporter of lager yeast

(2012) Virve Vidgren et al.   JOURNAL OF THE INSTITUTE OF BREWING

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Transcriptional consequences of aneuploidy

(2012) J. M. Sheltzer et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Microbe domestication and the identification of the wild genetic stock of lager-brewing yeast

(2011) D. Libkind et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Genome-wide expression analysis of Saccharomyces pastorianus orthologous genes using oligonucleotide microarrays

(2010) Takaaki Horinouchi et al.   JOURNAL OF BIOSCIENCE AND BIOENGINEERING

Aneuploidy confers quantitative proteome changes and phenotypic variation in budding yeast

(2010) Norman Pavelka et al.   NATURE

ClueGO: a Cytoscape plug-in to decipher functionally grouped gene ontology and pathway annotation networks

(2009) Gabriela Bindea et al.   BIOINFORMATICS

The Sequence Alignment/Map format and SAMtools

(2009) H. Li et al.   BIOINFORMATICS

Genome Sequence of the Lager Brewing Yeast, an Interspecies Hybrid

(2009) Y. Nakao et al.   DNA RESEARCH

Lager yeasts possess dynamic genomes that undergo rearrangements and gene amplification in response to stress

(2008) Tharappel C. James et al.   CURRENT GENETICS

Reconstruction of the genome origins and evolution of the hybrid lager yeast Saccharomyces pastorianus

(2008) B. Dunn et al.   GENOME RESEARCH