Population heterogeneity in clinical cohorts affects the predictive accuracy of brain imaging

Deep learning identifies partially overlapping subnetworks in the human social brain

(2021) Hannah Kiesow et al.   Communications Biology

Outcome after acute ischemic stroke is linked to sex-specific lesion patterns

(2021) Anna K. Bonkhoff et al.   Nature Communications

A multi-site, multi-disorder resting-state magnetic resonance image database

(2021) Saori C. Tanaka et al.   Scientific Data

Connectivity alterations in autism reflect functional idiosyncrasy

(2021) Oualid Benkarim et al.   Communications Biology

Alterations in Local Connectivity and Their Developmental Trajectories in Autism Spectrum Disorder: Does Being Female Matter?

(2020) Nataliia Kozhemiako et al.   CEREBRAL CORTEX

DeepFMRI: End-to-end deep learning for functional connectivity and classification of ADHD using fMRI

(2020) Atif Riaz et al.   JOURNAL OF NEUROSCIENCE METHODS

Analysing brain networks in population neuroscience: a case for the Bayesian philosophy

(2020) Danilo Bzdok et al.   PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Confound modelling in UK Biobank brain imaging

(2020) Fidel Alfaro-Almagro et al.   NEUROIMAGE

Causality matters in medical imaging

(2020) Daniel C. Castro et al.   Nature Communications

Atypical age-related changes in cortical thickness in autism spectrum disorder

(2020) Adonay S. Nunes et al.   Scientific Reports

Prediction, Not Association, Paves the Road to Precision Medicine

(2020) Danilo Bzdok et al.   JAMA Psychiatry

White matter abnormalities across different epilepsy syndromes in adults: an ENIGMA-Epilepsy study

(2020) Sean N Hatton et al.   BRAIN

Handling confounding variables in statistical shape analysis - application to cardiac remodelling

(2020) Gabriel Bernardino et al.   MEDICAL IMAGE ANALYSIS

Detect and Correct Bias in Multi-Site Neuroimaging Datasetstn1]

(2020) Christian Wachinger et al.   MEDICAL IMAGE ANALYSIS

Different scaling of linear models and deep learning in UKBiobank brain images versus machine-learning datasets

(2020) Marc-Andre Schulz et al.   Nature Communications

Machine-learning classification using neuroimaging data in schizophrenia, autism, ultra-high risk and first-episode psychosis

(2020) Walid Yassin et al.   Translational Psychiatry

Grey matter myelination

(2019) Sebastian Timmler et al.   GLIA

Exploration, Inference, and Prediction in Neuroscience and Biomedicine

(2019) Danilo Bzdok et al.   TRENDS IN NEUROSCIENCES

Myelin and Modeling: Bootstrapping Cortical Microcircuits

(2019) Robert Turner   Frontiers in Neural Circuits

Harmonization of resting-state functional MRI data across multiple imaging sites via the separation of site differences into sampling bias and measurement bias

(2019) Ayumu Yamashita et al.   PLOS BIOLOGY

Brain‐based ranking of cognitive domains to predict schizophrenia

(2019) Teresa M. Karrer et al.   HUMAN BRAIN MAPPING

From pattern classification to stratification: towards conceptualizing the heterogeneity of Autism Spectrum Disorder

(2019) Thomas Wolfers et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Propensity Score Methods in Health Technology Assessment: Principles, Extended Applications, and Recent Advances

(2019) M Sanni Ali et al.   Frontiers in Pharmacology

Evaluation of Altered Functional Connections in Male Children With Autism Spectrum Disorders on Multiple-Site Data Optimized With Machine Learning

(2019) Giovanna Spera et al.   Frontiers in Psychiatry

The Blessings of Multiple Causes

(2019) Yixin Wang et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

Personalized Intrinsic Network Topography Mapping and Functional Connectivity Deficits in Autism Spectrum Disorder

(2018) Erin W. Dickie et al.   BIOLOGICAL PSYCHIATRY

Statistical harmonization corrects site effects in functional connectivity measurements from multi-site fMRI data

(2018) Meichen Yu et al.   HUMAN BRAIN MAPPING

Idiosyncratic organization of cortical networks in autism spectrum disorder

(2018) Adonay S. Nunes et al.   NEUROIMAGE

A general prediction model for the detection of ADHD and Autism using structural and functional MRI

(2018) Bhaskar Sen et al.   PLoS One

Assessing the performance of the generalized propensity score for estimating the effect of quantitative or continuous exposures on binary outcomes

(2018) Peter C. Austin   STATISTICS IN MEDICINE

Assessment of the impact of shared brain imaging data on the scientific literature

(2018) Michael P. Milham et al.   Nature Communications

The Adolescent Brain Cognitive Development (ABCD) study: Imaging acquisition across 21 sites

(2018) B.J. Casey et al.   Developmental Cognitive Neuroscience

Shared endo-phenotypes of default mode dsfunction in attention deficit/hyperactivity disorder and autism spectrum disorder

(2018) Julius M. Kernbach et al.   Translational Psychiatry

Identification of autism spectrum disorder using deep learning and the ABIDE dataset

(2018) Anibal Sólon Heinsfeld et al.   NeuroImage-Clinical

How to control for confounds in decoding analyses of neuroimaging data

(2018) Lukas Snoek et al.   NEUROIMAGE

Atypical longitudinal development of functional connectivity in adolescents with autism spectrum disorder

(2018) Katherine E. Lawrence et al.   Autism Research

Building better biomarkers: brain models in translational neuroimaging

(2017) Choong-Wan Woo et al.   NATURE NEUROSCIENCE

Scanning the horizon: towards transparent and reproducible neuroimaging research

(2017) Russell A. Poldrack et al.   NATURE REVIEWS NEUROSCIENCE

Predicting symptom severity in autism spectrum disorder based on cortical thickness measures in agglomerative data

(2017) Elaheh Moradi et al.   NEUROIMAGE

Inference in the age of big data: Future perspectives on neuroscience

(2017) Danilo Bzdok et al.   NEUROIMAGE

Predictive modelling using neuroimaging data in the presence of confounds

(2017) Anil Rao et al.   NEUROIMAGE

The same analysis approach: Practical protection against the pitfalls of novel neuroimaging analysis methods

(2017) Kai Görgen et al.   NEUROIMAGE

Deriving reproducible biomarkers from multi-site resting-state data: An Autism-based example

(2017) Alexandre Abraham et al.   NEUROIMAGE

Harmonization of multi-site diffusion tensor imaging data

(2017) Jean-Philippe Fortin et al.   NEUROIMAGE

Single subject prediction of brain disorders in neuroimaging: Promises and pitfalls

(2017) Mohammad R. Arbabshirani et al.   NEUROIMAGE

Multisite Machine Learning Analysis Provides a Robust Structural Imaging Signature of Schizophrenia Detectable Across Diverse Patient Populations and Within Individuals

(2017) Martin Rozycki et al.   SCHIZOPHRENIA BULLETIN

Classical Statistics and Statistical Learning in Imaging Neuroscience

(2017) Danilo Bzdok   Frontiers in Neuroscience

An open resource for transdiagnostic research in pediatric mental health and learning disorders

(2017) Lindsay M. Alexander et al.   Scientific Data

Enhancing studies of the connectome in autism using the autism brain imaging data exchange II

(2017) Adriana Di Martino et al.   Scientific Data

Addressing Confounding in Predictive Models with an Application to Neuroimaging

(2016) Kristin A. Linn et al.  

Multivariate classification of autism spectrum disorder using frequency-specific resting-state functional connectivity—A multi-center study

(2016) Heng Chen et al.   PROGRESS IN NEURO-PSYCHOPHARMACOLOGY & BIOLOGICAL PSYCHIATRY

Sex differences in autism: a resting-state fMRI investigation of functional brain connectivity in males and females

(2016) Kaat Alaerts et al.   Social Cognitive and Affective Neuroscience

Addressing Confounding in Predictive Models with an Application to Neuroimaging

(2016) Kristin A. Linn et al.   International Journal of Biostatistics

The effect of gender on the neuroanatomy of children with autism spectrum disorders: a support vector machine case-control study

(2016) Alessandra Retico et al.   Molecular Autism

Multicenter mapping of structural network alterations in autism

(2015) Sofie L. Valk et al.   HUMAN BRAIN MAPPING

The development of brain network architecture

(2015) Lara M. Wierenga et al.   HUMAN BRAIN MAPPING

Propensity scores: Methods, considerations, and applications in the Journal of Thoracic and Cardiovascular Surgery

(2015) Timothy L. McMurry et al.   JOURNAL OF THORACIC AND CARDIOVASCULAR SURGERY

Prediction as a Humanitarian and Pragmatic Contribution from Human Cognitive Neuroscience

(2015) John D.E. Gabrieli et al.   NEURON

A compensatory role for declarative memory in neurodevelopmental disorders

(2015) Michael T. Ullman et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Sex and gender differences in autism spectrum disorder: summarizing evidence gaps and identifying emerging areas of priority

(2015) Alycia K Halladay et al.   Molecular Autism

Developmental changes in large-scale network connectivity in autism

(2015) Jason S. Nomi et al.   NeuroImage-Clinical

Functional connectivity classification of autism identifies highly predictive brain features but falls short of biomarker standards

(2015) Mark Plitt et al.   NeuroImage-Clinical

Disrupted Functional Connectivity in Dorsal and Ventral Attention Networks During Attention Orienting in Autism Spectrum Disorders

(2014) Jacqueline Fitzgerald et al.   Autism Research

Longitudinal changes in cortical thickness in autism and typical development

(2014) Brandon A. Zielinski et al.   BRAIN

Automatic denoising of functional MRI data: Combining independent component analysis and hierarchical fusion of classifiers

(2014) Gholamreza Salimi-Khorshidi et al.   NEUROIMAGE

Correction of inter-scanner and within-subject variance in structural MRI based automated diagnosing

(2014) Daniel Kostro et al.   NEUROIMAGE

Clinical Prediction from Structural Brain MRI Scans: A Large-Scale Empirical Study

(2014) Mert R. Sabuncu et al.   NEUROINFORMATICS

Selecting an Appropriate Caliper Can Be Essential for Achieving Good Balance With Propensity Score Matching

(2013) Mark Lunt   AMERICAN JOURNAL OF EPIDEMIOLOGY

Classifying social anxiety disorder using multivoxel pattern analyses of brain function and structure

(2013) Andreas Frick et al.   BEHAVIOURAL BRAIN RESEARCH

Multivariate classification of social anxiety disorder using whole brain functional connectivity

(2013) Feng Liu et al.   Brain Structure & Function

Sex differences in autism spectrum disorders

(2013) Donna M. Werling et al.   CURRENT OPINION IN NEUROLOGY

Multisite functional connectivity MRI classification of autism: ABIDE results

(2013) Jared A. Nielsen et al.   Frontiers in Human Neuroscience

Overview of potential procedural and participant- related confounds for neuroimaging of the resting state

(2013) Niall Duncan et al.   JOURNAL OF PSYCHIATRY & NEUROSCIENCE

The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism

(2013) A Di Martino et al.   MOLECULAR PSYCHIATRY

The WU-Minn Human Connectome Project: An overview

(2013) David C. Van Essen et al.   NEUROIMAGE

Individual Variability in Functional Connectivity Architecture of the Human Brain

(2013) Sophia Mueller et al.   NEURON

Optimal Caliper Width for Propensity Score Matching of Three Treatment Groups: A Monte Carlo Study

(2013) Yongji Wang et al.   PLoS One

Covariate-adjusted nonparametric analysis of magnetic resonance images using Markov chain Monte Carlo

(2013) Susan Spear Bassett et al.   Statistics and Its Interface

FreeSurfer

(2012) Bruce Fischl   NEUROIMAGE

Autism as a neural systems disorder: A theory of frontal-posterior underconnectivity

(2012) Marcel Adam Just et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Using Support Vector Machine to identify imaging biomarkers of neurological and psychiatric disease: A critical review

(2012) Graziella Orrù et al.   NEUROSCIENCE AND BIOBEHAVIORAL REVIEWS

Underconnected, but How? A Survey of Functional Connectivity MRI Studies in Autism Spectrum Disorders

(2011) Ralph-Axel Müller et al.   CEREBRAL CORTEX

The organization of the human cerebral cortex estimated by intrinsic functional connectivity

(2011) B. T. Thomas Yeo et al.   JOURNAL OF NEUROPHYSIOLOGY

Mapping Human Cortical Areas In Vivo Based on Myelin Content as Revealed by T1- and T2-Weighted MRI

(2011) M. F. Glasser et al.   JOURNAL OF NEUROSCIENCE

Gender differences in anxiety disorders: Prevalence, course of illness, comorbidity and burden of illness

(2011) Carmen P. McLean et al.   JOURNAL OF PSYCHIATRIC RESEARCH

An Introduction to Propensity Score Methods for Reducing the Effects of Confounding in Observational Studies

(2011) Peter C. Austin   MULTIVARIATE BEHAVIORAL RESEARCH

A unifying view on dataset shift in classification

(2011) Jose G. Moreno-Torres et al.   PATTERN RECOGNITION

Weight Trimming and Propensity Score Weighting

(2011) Brian K. Lee et al.   PLoS One

Age Correction in Dementia – Matching to a Healthy Brain

(2011) Juergen Dukart et al.   PLoS One

Treatment Effects in the Presence of Unmeasured Confounding: Dealing With Observations in the Tails of the Propensity Score Distribution--A Simulation Study

(2010) T. Sturmer et al.   AMERICAN JOURNAL OF EPIDEMIOLOGY

Propensity score estimation: neural networks, support vector machines, decision trees (CART), and meta-classifiers as alternatives to logistic regression

(2010) Daniel Westreich et al.   JOURNAL OF CLINICAL EPIDEMIOLOGY

Abnormal functional connectivity of default mode sub-networks in autism spectrum disorder patients

(2010) Michal Assaf et al.   NEUROIMAGE

Optimal caliper widths for propensity-score matching when estimating differences in means and differences in proportions in observational studies

(2010) Peter C. Austin   PHARMACEUTICAL STATISTICS

Toward discovery science of human brain function

(2010) B. B. Biswal et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Matching Methods for Causal Inference: A Review and a Look Forward

(2010) Elizabeth A. Stuart   STATISTICAL SCIENCE

Discriminative analysis of resting-state functional connectivity patterns of schizophrenia using low dimensional embedding of fMRI

(2009) Hui Shen et al.   NEUROIMAGE

Functional Brain Correlates of Social and Nonsocial Processes in Autism Spectrum Disorders: An Activation Likelihood Estimation Meta-Analysis

(2008) Adriana Di Martino et al.   BIOLOGICAL PSYCHIATRY

Machine learning classifiers and fMRI: A tutorial overview

(2008) Francisco Pereira et al.   NEUROIMAGE

Threshold-free cluster enhancement: Addressing problems of smoothing, threshold dependence and localisation in cluster inference

(2008) S SMITH et al.   NEUROIMAGE

Evaluating uses of data mining techniques in propensity score estimation: a simulation study

(2008) Soko Setoguchi et al.   PHARMACOEPIDEMIOLOGY AND DRUG SAFETY

The intrinsic functional organization of the brain is altered in autism

(2007) Daniel P. Kennedy et al.   NEUROIMAGE