Promoter-Terminator Gene Loops Affect Alternative 3′-End Processing in Yeast

Alternative polyadenylation in the nervous system: To what lengths will 3′ UTR extensions take us?

(2014) Pedro Miura et al.   BIOESSAYS

RBBP6 isoforms regulate the human polyadenylation machinery and modulate expression of mRNAs with AU-rich 3′ UTRs

(2014) Dafne Campigli Di Giammartino et al.   GENES & DEVELOPMENT

The Ssu72 Phosphatase Mediates the RNA Polymerase II Initiation-Elongation Transition

(2014) Jesús D. Rosado-Lugo et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Ubiquitously transcribed genes use alternative polyadenylation to achieve tissue-specific expression

(2013) S. Lianoglou et al.   GENES & DEVELOPMENT

UV damage regulates alternative polyadenylation of the RPB2 gene in yeast

(2013) Lijian Yu et al.   NUCLEIC ACIDS RESEARCH

Disengaging polymerase: Terminating RNA polymerase II transcription in budding yeast

(2012) Hannah E. Mischo et al.   Biochimica et Biophysica Acta-Gene Regulatory Mechanisms

Ssu72 Phosphatase-dependent Erasure of Phospho-Ser7 Marks on the RNA Polymerase II C-terminal Domain Is Essential for Viability and Transcription Termination

(2012) David W. Zhang et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

A Universal RNA Polymerase II CTD Cycle Is Orchestrated by Complex Interplays between Kinase, Phosphatase, and Isomerase Enzymes along Genes

(2012) Alain R. Bataille et al.   MOLECULAR CELL

Gene Loops Enhance Transcriptional Directionality

(2012) S. M. Tan-Wong et al.   SCIENCE

The yeast regulator of transcription protein Rtr1 lacks an active site and phosphatase activity

(2012) Kehui Xiang et al.   Nature Communications

Crystal structure of Ssu72, an essential eukaryotic phosphatase specific for the C-terminal domain of RNA polymerase II, in complex with a transition state analogue

(2011) Yong Zhang et al.   BIOCHEMICAL JOURNAL

Mechanisms and Consequences of Alternative Polyadenylation

(2011) Dafne Campigli Di Giammartino et al.   MOLECULAR CELL

Unravelling the means to an end: RNA polymerase II transcription termination

(2011) Jason N. Kuehner et al.   NATURE REVIEWS MOLECULAR CELL BIOLOGY

New Suppressors of THO Mutations Identify Thp3 (Ypr045c)-Csn12 as a Protein Complex Involved in Transcription Elongation

(2010) S. Jimeno et al.   MOLECULAR AND CELLULAR BIOLOGY

Crystal structure of the human symplekin–Ssu72–CTD phosphopeptide complex

(2010) Kehui Xiang et al.   NATURE

Involvement of Pta1, Pcf11 and aKlCYC1AU-rich element in alternative RNA 3′-end processing selection in yeast

(2009) Silvia Seoane et al.   FEBS LETTERS

A physiological role for gene loops in yeast

(2009) Jean-Philippe Lainé et al.   GENES & DEVELOPMENT

Gene loops function to maintain transcriptional memory through interaction with the nuclear pore complex

(2009) Sue Mei Tan-Wong et al.   GENES & DEVELOPMENT

Transcription termination by nuclear RNA polymerases

(2009) P. Richard et al.   GENES & DEVELOPMENT

Phosphorylation of the Yeast Rpb1 C-terminal Domain at Serines 2, 5, and 7

(2009) Minkyu Kim et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Gene Looping Is Conferred by Activator-dependent Interaction of Transcription Initiation and Termination Machineries

(2009) Belal El Kaderi et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Detection of gene loops by 3C in yeast

(2009) Badri Nath Singh et al.   METHODS

Species-specificcis-Regulatory Elements in the 3′-Untranslated Region Direct Alternative Polyadenylation of Bone Morphogenetic Protein 2 mRNA

(2008) Donglin Liu et al.   JOURNAL OF BIOLOGICAL CHEMISTRY

Single-RNA counting reveals alternative modes of gene expression in yeast

(2008) Daniel Zenklusen et al.   NATURE STRUCTURAL & MOLECULAR BIOLOGY