4.8 Article

Activation and allosteric regulation of the orphan GPR88-Gi1 signaling complex

Journal

NATURE COMMUNICATIONS
Volume 13, Issue 1, Pages -

Publisher

NATURE PORTFOLIO
DOI: 10.1038/s41467-022-30081-5

Keywords

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Funding

  1. Science, Technology and Innovation Commission of Shenzhen Municipality [JCYJ20200109150019113, SZBL2020090501011]
  2. Kobilka Institute of Innovative Drug Discovery and Presidential Fellowship at the Chinese University of Hong Kong, Shenzhen
  3. Kobilka Institute of Innovative Drug Discovery at the Chinese University of Hong Kong, Shenzhen
  4. Japan Agency for Medical Research and Development (AMED) [PRIME 19gm5910013, LEAP JP19gm0010004, BINDS JP20am0101095, JPMJFR215T]
  5. Promotion of Science (JSPS) KAKENHI grant [21H04791, 21H05113, JPJSBP120213501, JPJSBP120218801]
  6. Moonshot Research and Development Program [JPMJMS2023]
  7. Daiichi Sankyo Foundation of Life Science
  8. Uehara Memorial Foundation
  9. Ono Medical Research Foundation
  10. Takeda Science Foundation
  11. DFG [GRK 1910]
  12. Grants-in-Aid for Scientific Research [21H04791, 21H05113] Funding Source: KAKEN

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This study reports two structures of the human GPR88-Gi complex, revealing an allosteric ligand involved in the interaction between the receptor and G-protein, and a potential endogenous ligand of GPR88.
GPR88 is an orphan class A G-protein-coupled receptor that is highly expressed in the striatum and regulates diverse brain and behavioral functions. Here we present cryo-EM structures of the human GPR88-Gi1 signaling complex with or without a synthetic agonist (1R, 2R)-2-PCCA. We show that (1R, 2R)-2-PCCA is an allosteric modulator binding to a herein identified pocket formed by the cytoplasmic ends of transmembrane segments 5, 6, and the extreme C terminus of the alpha 5 helix of Gi1. We also identify an electron density in the extracellular orthosteric site that may represent a putative endogenous ligand of GPR88. These structures, together with mutagenesis studies and an inactive state model obtained from metadynamics simulations, reveal a unique activation mechanism for GPR88 with a set of distinctive structure features and a water-mediated polar network. Overall, our results provide a structural framework for understanding the ligand binding, activation and signaling mechanism of GPR88, and will facilitate the innovative drug discovery for neuropsychiatric disorders and for deorphanization of this receptor. GPR88 is an orphan GPCR and regulates diverse brain functions. Here, the authors report two structures of the human GPR88-Gi complex, showing an allosteric ligand directly involved in the interaction interface between the receptor and G-protein, and a density which may represent an endogenous ligand of GPR88.

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