Phylogenomic resolution of the root of Panpulmonata, a hyperdiverse radiation of gastropods: new insight into the evolution of air breathing

FASTRAL: Improving scalability of phylogenomic analysis

(2021) Payam Dibaeinia et al.   BIOINFORMATICS

Phylogenomic subsampling and the search for phylogenetically reliable loci

(2021) Nicolás Mongiardino Koch   MOLECULAR BIOLOGY AND EVOLUTION

IQ-TREE 2: New Models and Efficient Methods for Phylogenetic Inference in the Genomic Era

(2020) Bui Quang Minh et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogeny of freshwater snails and limpets (Panpulmonata: Hygrophila)

(2020) Ahmed J Saadi et al.   ZOOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

Evaluating the usefulness of alignment filtering methods to reduce the impact of errors on evolutionary inferences

(2019) Arnaud Di Franco et al.   BMC EVOLUTIONARY BIOLOGY

A congruent topology for deep gastropod relationships

(2019) Tauana Junqueira Cunha et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Transitions between foot postures are associated with elevated rates of body size evolution in mammals

(2019) Tai Kubo et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

A software tool ‘CroCo’ detects pervasive cross-species contamination in next generation sequencing data

(2018) Paul Simion et al.   BMC BIOLOGY

Posterior Summarization in Bayesian Phylogenetics Using Tracer 1.7

(2018) Andrew Rambaut et al.   SYSTEMATIC BIOLOGY

Phylogenetic systematics of the shelled sea slug genus Oxynoe Rafinesque, 1814 (Heterobranchia : Sacoglossa), with integrative descriptions of seven new species

(2018) Patrick J. Krug et al.   INVERTEBRATE SYSTEMATICS

Cryptic speciation yields remarkable mimics: A new genus of sea slugs that masquerade as toxic algae (Caulerpa spp.)

(2018) Patrick J. Krug et al.   ZOOLOGICA SCRIPTA

Revised Classification, Nomenclator and Typification of Gastropod and Monoplacophoran Families

(2017) Philippe Bouchet et al.   MALACOLOGIA

BUSCO Applications from Quality Assessments to Gene Prediction and Phylogenomics

(2017) Robert M Waterhouse et al.   MOLECULAR BIOLOGY AND EVOLUTION

Modeling Site Heterogeneity with Posterior Mean Site Frequency Profiles Accelerates Accurate Phylogenomic Estimation

(2017) Huai-Chun Wang et al.   SYSTEMATIC BIOLOGY

Fast Coalescent-Based Computation of Local Branch Support from Quartet Frequencies

(2016) Erfan Sayyari et al.   MOLECULAR BIOLOGY AND EVOLUTION

Molecular phylogeny of the Ellobiidae (Gastropoda: Panpulmonata) supports independent terrestrial invasions

(2016) Pedro E. Romero et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs

(2015) Felipe A. Simão et al.   BIOINFORMATICS

Sea-slug invasion of the land

(2015) Yasunori Kano et al.   BIOLOGICAL JOURNAL OF THE LINNEAN SOCIETY

A RESTful API for Access to Phylogenetic Tools via the CIPRES Science Gateway

(2015) Mark A. Miller et al.   Evolutionary Bioinformatics

Species Selection Favors Dispersive Life Histories in Sea Slugs, but Higher Per-Offspring Investment Drives Shifts to Short-Lived Larvae

(2015) Patrick J. Krug et al.   SYSTEMATIC BIOLOGY

A New Critical Estimate of Named Species-Level Diversity of the Recent Mollusca*

(2014) Gary Rosenberg   AMERICAN MALACOLOGICAL BULLETIN

Phylogenetic evidence for multiple independent origins of functional kleptoplasty in Sacoglossa (Heterobranchia, Gastropoda)

(2014) Gregor Christa et al.   ORGANISMS DIVERSITY & EVOLUTION

Phylogenomic analyses of deep gastropod relationships reject Orthogastropoda

(2014) F. Zapata et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Phylogenomics supports Panpulmonata: Opisthobranch paraphyly and key evolutionary steps in a major radiation of gastropod molluscs

(2013) Kevin M. Kocot et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

De novo transcript sequence reconstruction from RNA-seq using the Trinity platform for reference generation and analysis

(2013) Brian J Haas et al.   Nature Protocols

PhyloBayes MPI: Phylogenetic Reconstruction with Infinite Mixtures of Profiles in a Parallel Environment

(2013) Nicolas Lartillot et al.   SYSTEMATIC BIOLOGY

Widespread and persistent invasions of terrestrial habitats coincident with larval feeding behavior transitions during snail-killing fly evolution (Diptera: Sciomyzidae)

(2012) Eric G Chapman et al.   BMC EVOLUTIONARY BIOLOGY

Biodiversity in water and on land

(2012) Richard K. Grosberg et al.   CURRENT BIOLOGY

Ten new complete mitochondrial genomes of pulmonates (Mollusca: Gastropoda) and their impact on phylogenetic relationships

(2011) Tracy R White et al.   BMC EVOLUTIONARY BIOLOGY

Crawling through time: Transition of snails to slugs dating back to the Paleozoic, based on mitochondrial phylogenomics

(2011) Mónica Medina et al.   Marine Genomics

A reply to Medina et al. (2011): Crawling through time: Transition of snails to slugs dating back to the Paleozoic based on mitochondrial phylogenomics

(2011) M. Schrödl et al.   Marine Genomics

Phylogenetic relationships and evolution of pulmonate gastropods (Mollusca): New insights from increased taxon sampling

(2011) Benoît Dayrat et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

BMGE (Block Mapping and Gathering with Entropy): a new software for selection of phylogenetic informative regions from multiple sequence alignments

(2010) Alexis Criscuolo et al.   BMC EVOLUTIONARY BIOLOGY

On the origin of Acochlidia and other enigmatic euthyneuran gastropods, with implications for the systematics of Heterobranchia

(2010) Katharina M Jörger et al.   BMC EVOLUTIONARY BIOLOGY

FastTree 2 – Approximately Maximum-Likelihood Trees for Large Alignments

(2010) Morgan N. Price et al.   PLoS One

The long way to diversity – Phylogeny and evolution of the Heterobranchia (Mollusca: Gastropoda)

(2009) Angela Dinapoli et al.   MOLECULAR PHYLOGENETICS AND EVOLUTION

Evolution of gastropod mitochondrial genome arrangements

(2008) Cristina Grande et al.   BMC EVOLUTIONARY BIOLOGY

From sea to land and beyond – New insights into the evolution of euthyneuran Gastropoda (Mollusca)

(2008) Annette Klussmann-Kolb et al.   BMC EVOLUTIONARY BIOLOGY