Pleiotropic and nonredundant effects of an auxin importer in Setaria and maize

The CLV3 Homolog in Setaria viridis Selectively Controls Inflorescence Meristem Size

(2021) Chuanmei Zhu et al.   Frontiers in Plant Science

Gene Ontology Meta Annotator for Plants (GOMAP)

(2021) Kokulapalan Wimalanathan et al.   Plant Methods

Divergent gene expression networks underlie morphological diversity of abscission zones in grasses

(2019) Yunqing Yu et al.   NEW PHYTOLOGIST

Developmental Roles of AUX1/LAX Auxin Influx Carriers in Plants

(2019) Ranjan Swarup et al.   Frontiers in Plant Science

Regulation of auxin transcriptional responses

(2019) Samantha K. Powers et al.   DEVELOPMENTAL DYNAMICS

Coordination of tissue cell polarity by auxin transport and signaling

(2019) Carla Verna et al.   eLife

Auxin: a molecular trigger of seed development

(2018) Duarte D. Figueiredo et al.   GENES & DEVELOPMENT

Broad spectrum developmental role of Brachypodium AUX1

(2018) Alja van der Schuren et al.   NEW PHYTOLOGIST

GRF-interacting factor1Regulates Shoot Architecture and Meristem Determinacy in Maize

(2018) Dan Zhang et al.   PLANT CELL

Out of Shape During Stress: A Key Role for Auxin

(2018) Ruud A. Korver et al.   TRENDS IN PLANT SCIENCE

A Dynamic Co-expression Map of Early Inflorescence Development in Setaria viridis Provides a Resource for Gene Discovery and Comparative Genomics

(2018) Chuanmei Zhu et al.   Frontiers in Plant Science

Control of Endogenous Auxin Levels in Plant Root Development

(2017) Damilola Olatunji et al.   INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES

Auxin and above-ground meristems

(2017) Ying Wang et al.   JOURNAL OF EXPERIMENTAL BOTANY

Arabidopsis thaliana RECEPTOR DEAD KINASE1 Functions as a Positive Regulator in Plant Responses to ABA

(2017) Dhinesh Kumar et al.   Molecular Plant

Grass inflorescence architecture and evolution: the origin of novel signaling centers

(2017) Clinton J. Whipple   NEW PHYTOLOGIST

Optimization of Phenotyping Assays for the Model Monocot Setaria viridis

(2017) Biswa R. Acharya et al.   Frontiers in Plant Science

Setaria Comes of Age: Meeting Report on the Second International Setaria Genetics Conference

(2017) Chuanmei Zhu et al.   Frontiers in Plant Science

As above, so below: Auxin's role in lateral organ development

(2016) Mallorie Taylor-Teeples et al.   DEVELOPMENTAL BIOLOGY

The importance of localized auxin production for morphogenesis of reproductive organs and embryos inArabidopsis

(2015) Hélène S. Robert et al.   JOURNAL OF EXPERIMENTAL BOTANY

Proteomic Analysis to Identify Tightly-Bound Cell Wall Protein in Rice Calli

(2015) Won Kyong Cho et al.   MOLECULES AND CELLS

OsAUX1 controls lateral root initiation in rice (Oryza sativa L.)

(2015) Heming Zhao et al.   PLANT CELL AND ENVIRONMENT

The auxin transporter, OsAUX1, is involved in primary root and root hair elongation and in Cd stress responses in rice (Oryza sativaL.)

(2015) ChenLiang Yu et al.   PLANT JOURNAL

Auxin signaling modules regulate maize inflorescence architecture

(2015) Mary Galli et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

Trimmomatic: a flexible trimmer for Illumina sequence data

(2014) Anthony M. Bolger et al.   BIOINFORMATICS

Gene regulatory interactions at lateral organ boundaries in maize

(2014) M. W. Lewis et al.   DEVELOPMENT

A Division in PIN-Mediated Auxin Patterning during Organ Initiation in Grasses

(2014) Devin L. O'Connor et al.   PLoS Computational Biology

The role of auxin transporters in monocots development

(2014) Sara Balzan et al.   Frontiers in Plant Science

The role of auxin in shaping shoot architecture

(2013) Andrea Gallavotti   JOURNAL OF EXPERIMENTAL BOTANY

A SHORT INTERNODES (SHI) family transcription factor gene regulates awn elongation and pistil morphology in barley

(2012) Takahisa Yuo et al.   JOURNAL OF EXPERIMENTAL BOTANY

NIH Image to ImageJ: 25 years of image analysis

(2012) Caroline A Schneider et al.   NATURE METHODS

Fast gapped-read alignment with Bowtie 2

(2012) Ben Langmead et al.   NATURE METHODS

Differential gene and transcript expression analysis of RNA-seq experiments with TopHat and Cufflinks

(2012) Cole Trapnell et al.   Nature Protocols

AUX/LAX Genes Encode a Family of Auxin Influx Transporters That Perform Distinct Functions during Arabidopsis Development

(2012) B. Peret et al.   PLANT CELL

TAWAWA1, a regulator of rice inflorescence architecture, functions through the suppression of meristem phase transition

(2012) A. Yoshida et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

TCP transcription factor, BRANCH ANGLE DEFECTIVE 1 (BAD1), is required for normal tassel branch angle formation in maize

(2012) Fang Bai et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

AUX/LAX family of auxin influx carriers—an overview

(2012) Ranjan Swarup et al.   Frontiers in Plant Science

ArabidopsisTERMINAL FLOWER1 Is Involved in the Regulation of Flowering Time and Inflorescence Development through Transcriptional Repression

(2011) Shigeru Hanano et al.   PLANT CELL

BARREN STALK FASTIGIATE1 Is an AT-Hook Protein Required for the Formation of Maize Ears

(2011) Andrea Gallavotti et al.   PLANT CELL

vanishing tassel2Encodes a Grass-Specific Tryptophan Aminotransferase Required for Vegetative and Reproductive Development in Maize

(2011) Kimberly A. Phillips et al.   PLANT CELL

The Arabidopsis concentration-dependent influx/efflux transporter ABCB4 regulates cellular auxin levels in the root epidermis

(2011) Martin Kubeš et al.   PLANT JOURNAL

Is My Network Module Preserved and Reproducible?

(2011) Peter Langfelder et al.   PLoS Computational Biology

The maize SBP-box transcription factor encoded by tasselsheath4 regulates bract development and the establishment of meristem boundaries

(2010) G. Chuck et al.   DEVELOPMENT

The developmental dynamics of the maize leaf transcriptome

(2010) Pinghua Li et al.   NATURE GENETICS

A Conserved Mechanism of Bract Suppression in the Grass Family

(2010) C. J. Whipple et al.   PLANT CELL

Concerted Modification of Flowering Time and Inflorescence Architecture by Ectopic Expression of TFL1-Like Genes in Maize

(2010) O. N. Danilevskaya et al.   PLANT PHYSIOLOGY

NECK LEAF 1, a GATA type transcription factor, modulates organogenesis by regulating the expression of multiple regulatory genes during reproductive development in rice

(2009) Liping Wang et al.   CELL RESEARCH

BARREN INFLORESCENCE2 Interaction with ZmPIN1a Suggests a Role in Auxin Transport During Maize Inflorescence Development

(2009) Andrea Skirpan et al.   PLANT AND CELL PHYSIOLOGY

Natural variation in maize architecture is mediated by allelic differences at the PINOID co-orthologbarren inflorescence2

(2009) Gael Pressoir et al.   PLANT JOURNAL

Studies of aberrant phyllotaxy1 Mutants of Maize Indicate Complex Interactions between Auxin and Cytokinin Signaling in the Shoot Apical Meristem

(2009) B.-h. Lee et al.   PLANT PHYSIOLOGY

WGCNA: an R package for weighted correlation network analysis

(2008) Peter Langfelder et al.   BMC BIOINFORMATICS

Auxin influx carriers stabilize phyllotactic patterning

(2008) K. Bainbridge et al.   GENES & DEVELOPMENT

Barren inflorescence1 Functions in Organogenesis During Vegetative and Inflorescence Development in Maize

(2008) S. Barazesh et al.   GENETICS

Analyzing real-time PCR data by the comparative CT method

(2008) Thomas D Schmittgen et al.   Nature Protocols

The Relationship between Auxin Transport and Maize Branching

(2008) A. Gallavotti et al.   PLANT PHYSIOLOGY

sparse inflorescence1 encodes a monocot-specific YUCCA-like gene required for vegetative and reproductive development in maize

(2008) A. Gallavotti et al.   PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA