Core arbuscular mycorrhizal fungi are predicted by their high abundance–occupancy relationship while host‐specific taxa are rare and geographically structured

Applying the core microbiome to understand host-microbe systems

(2020) Alice Risely   JOURNAL OF ANIMAL ECOLOGY

Fungal communities living within leaves of native Hawaiian dicots are structured by landscape‐scale variables as well as by host plants

(2020) John L. Darcy et al.   MOLECULAR ECOLOGY

Three decades post‐reforestation has not led to the reassembly of arbuscular mycorrhizal fungal communities associated with remnant primary forests

(2020) Christopher B. Wall et al.   MOLECULAR ECOLOGY

Bryophyte abundance, composition and importance to woody plant recruitment in natural and restoration forests

(2019) Evan M. Rehm et al.   FOREST ECOLOGY AND MANAGEMENT

Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2

(2019) Evan Bolyen et al.   NATURE BIOTECHNOLOGY

The global tree restoration potential

(2019) Jean-Francois Bastin et al.   SCIENCE

Disturbance reduces the differentiation of mycorrhizal fungal communities in grasslands along a precipitation gradient

(2018) Geoffrey L. House et al.   ECOLOGICAL APPLICATIONS

Using mock communities of arbuscular mycorrhizal fungi to evaluate fidelity associated with Illumina sequencing

(2018) Cameron Patrick Egan et al.   Fungal Ecology

Benefits of mycorrhizal inoculation to ecological restoration depend on plant functional type, restoration context and time

(2018) Lena Neuenkamp et al.   Fungal Ecology

Effects of land use on arbuscular mycorrhizal fungal communities in Estonia

(2018) Siim-Kaarel Sepp et al.   MYCORRHIZA

Evolutionary history of mycorrhizal symbioses and global host plant diversity

(2018) Mark C. Brundrett et al.   NEW PHYTOLOGIST

Optimizing taxonomic classification of marker-gene amplicon sequences with QIIME 2’s q2-feature-classifier plugin

(2018) Nicholas A. Bokulich et al.   Microbiome

Exact sequence variants should replace operational taxonomic units in marker-gene data analysis

(2017) Benjamin J Callahan et al.   ISME Journal

Links between community ecology theory and ecological restoration are on the rise

(2017) Claire E. Wainwright et al.   JOURNAL OF APPLIED ECOLOGY

Rapid colonization of a Hawaiian restoration forest by a diverse avian community

(2017) Eben H. Paxton et al.   RESTORATION ECOLOGY

Soil networks become more connected and take up more carbon as nature restoration progresses

(2017) Elly Morriën et al.   Nature Communications

The microbiome beyond the horizon of ecological and evolutionary theory

(2017) Britt Koskella et al.   Nature Ecology & Evolution

Community assembly and coexistence in communities of arbuscular mycorrhizal fungi

(2016) Kriszta Vályi et al.   ISME Journal

The missing link in grassland restoration: arbuscular mycorrhizal fungi inoculation increases plant diversity and accelerates succession

(2016) Liz Koziol et al.   JOURNAL OF APPLIED ECOLOGY

Differences in the composition of arbuscular mycorrhizal fungal communities promoted by different propagule forms from a Mediterranean shrubland

(2016) Sara Varela-Cervero et al.   MYCORRHIZA

DADA2: High-resolution sample inference from Illumina amplicon data

(2016) Benjamin J Callahan et al.   NATURE METHODS

Testing life history and trait-based predictions of AM fungal community assembly

(2016) Miranda M. Hart et al.   PEDOBIOLOGIA

Linking dominant Hawaiian tree species to understory development in recovering pastures via impacts on soils and litter

(2016) Stephanie G. Yelenik   RESTORATION ECOLOGY

iNEXT: an R package for rarefaction and extrapolation of species diversity (Hill numbers)

(2016) T. C. Hsieh et al.   Methods in Ecology and Evolution

Spatio-Temporal Variation of Core and Satellite Arbuscular Mycorrhizal Fungus Communities in Miscanthus giganteus

(2016) Christopher J. Barnes et al.   Frontiers in Microbiology

The composition of arbuscular mycorrhizal fungal communities differs among the roots, spores and extraradical mycelia associated with five Mediterranean plant species

(2015) Sara Varela-Cervero et al.   ENVIRONMENTAL MICROBIOLOGY

The coral core microbiome identifies rare bacterial taxa as ubiquitous endosymbionts

(2015) Tracy D Ainsworth et al.   ISME Journal

Sources of inocula influence mycorrhizal colonization of plants in restoration projects: a meta-analysis

(2015) Mia R. Maltz et al.   RESTORATION ECOLOGY

Global assessment of arbuscular mycorrhizal fungus diversity reveals very low endemism

(2015) J. Davison et al.   SCIENCE

Advances in restoration ecology: rising to the challenges of the coming decades

(2015) Michael P. Perring et al.   Ecosphere

Habitat fragmentation and its lasting impact on Earth's ecosystems

(2015) N. M. Haddad et al.   Science Advances

Detection of arbuscular mycorrhizal fungal spores in the air across different biomes and ecoregions

(2014) Cameron Egan et al.   Fungal Ecology

Host identity is a dominant driver of mycorrhizal fungal community composition during ecosystem development

(2014) Laura B. Martínez-García et al.   NEW PHYTOLOGIST

Severe plant invasions can increase mycorrhizal fungal abundance and diversity

(2013) Ylva Lekberg et al.   ISME Journal

Arbuscular Mycorrhizal Fungal Networks Vary throughout the Growing Season and between Successional Stages

(2013) Alison Elizabeth Bennett et al.   PLoS One

A trait-based framework to understand life history of mycorrhizal fungi

(2013) Pierre-Luc Chagnon et al.   TRENDS IN PLANT SCIENCE

Global Biodiversity Change: The Bad, the Good, and the Unknown

(2012) Henrique Miguel Pereira et al.   Annual Review of Environment and Resources

Defining the core Arabidopsis thaliana root microbiome

(2012) Derek S. Lundberg et al.   NATURE

Long-term differences in extinction risk among the seven forms of rarity

(2012) P. G. Harnik et al.   PROCEEDINGS OF THE ROYAL SOCIETY B-BIOLOGICAL SCIENCES

Specialization and Rarity Predict Nonrandom Loss of Interactions from Mutualist Networks

(2012) M. A. Aizen et al.   SCIENCE

Symbiosis specificity in the legume - rhizobial mutualism

(2011) Dong Wang et al.   CELLULAR MICROBIOLOGY

Alien plants associate with widespread generalist arbuscular mycorrhizal fungal taxa: evidence from a continental-scale study using massively parallel 454 sequencing

(2011) Mari Moora et al.   JOURNAL OF BIOGEOGRAPHY

Distinct seasonal assemblages of arbuscular mycorrhizal fungi revealed by massively parallel pyrosequencing

(2011) Alex J. Dumbrell et al.   NEW PHYTOLOGIST

Global diversity and distribution of arbuscular mycorrhizal fungi

(2011) Stephanie N. Kivlin et al.   SOIL BIOLOGY & BIOCHEMISTRY

How successful are plant species reintroductions?

(2010) Sandrine Godefroid et al.   BIOLOGICAL CONSERVATION

Negative plant–soil feedback predicts tree-species relative abundance in a tropical forest

(2010) Scott A. Mangan et al.   NATURE

The online database MaarjAM reveals global and ecosystemic distribution patterns in arbuscular mycorrhizal fungi (Glomeromycota)

(2010) M. Öpik et al.   NEW PHYTOLOGIST

BLAST+: architecture and applications

(2009) Christiam Camacho et al.   BMC BIOINFORMATICS

Defining the healthy "core microbiome" of oral microbial communities

(2009) Egija Zaura et al.   BMC MICROBIOLOGY

Molecular diversity of arbuscular mycorrhizal fungi and their distribution patterns related to host-plants and habitats in a hot and arid ecosystem, southwest China

(2009) Ling-Fei Li et al.   FEMS MICROBIOLOGY ECOLOGY

Disentangling the Web of Life

(2009) Jordi Bascompte   SCIENCE

The unseen majority: soil microbes as drivers of plant diversity and productivity in terrestrial ecosystems

(2008) Marcel G. A. van der Heijden et al.   ECOLOGY LETTERS

Improved PCR primers for the detection and identification of arbuscular mycorrhizal fungi

(2008) Jaikoo Lee et al.   FEMS MICROBIOLOGY ECOLOGY

A core gut microbiome in obese and lean twins

(2008) Peter J. Turnbaugh et al.   NATURE

A consistent metric for nestedness analysis in ecological systems: reconciling concept and measurement

(2008) Mário Almeida-Neto et al.   OIKOS