Genomic prediction of growth and wood quality traits in Eucalyptus benthamii using different genomic models and variable SNP genotyping density

Genomic relationship–based genetic parameters and prospects of genomic selection for growth and wood quality traits in Eucalyptus benthamii

(2021) João Gabriel Zanon Paludeto et al.   Tree Genetics & Genomes

Origin of planted Eucalyptus benthamii trees in Camden NSW: checking the effectiveness of circa situm conservation measures using molecular markers

(2020) Ludi Han et al.   BIODIVERSITY AND CONSERVATION

Genomic measures of inbreeding coefficients and genome-wide scan for runs of homozygosity islands in Iranian river buffalo, Bubalus bubalis

(2020) Seyed Mohammad Ghoreishifar et al.   BMC GENETICS

Potential of a population of Eucalyptus benthamii based on growth and technological characteristics of wood

(2020) Alexandre Gomes Ferraz et al.   EUPHYTICA

Expected benefits of genomic selection for growth and wood quality traits in Eucalyptus grandis

(2020) Makobatjatji M. Mphahlele et al.   Tree Genetics & Genomes

Evaluation of GBLUP, BayesB and elastic net for genomic prediction in Chinese Simmental beef cattle

(2019) Xiaoqiao Wang et al.   PLoS One

Multi‐trait genomic selection for weevil resistance, growth, and wood quality in Norway spruce

(2019) Patrick R.N. Lenz et al.   Evolutionary Applications

Selection of trait-specific markers and multi-environment models improve genomic predictive ability in rice

(2019) Aditi Bhandari et al.   PLoS One

Quantitative genetic parameters for growth and wood properties in Eucalyptus “urograndis” hybrid using near-infrared phenotyping and genome-wide SNP-based relationships

(2019) Bruno Marco de Lima et al.   PLoS One

Genomic Prediction of Additive and Non-additive Effects Using Genetic Markers and Pedigrees

(2019) Janeo Eustáquio de Almeida Filho et al.   G3-Genes Genomes Genetics

A Growth and Yield Model for Eucalyptus benthamii in the Southeastern United States

(2019) Kevin B Hall et al.   FOREST SCIENCE

Efficient Estimation of Marker Effects in Plant Breeding

(2019) Alencar Xavier   G3-Genes Genomes Genetics

Efficiency of genomic prediction across two Eucalyptus nitens seed orchards with different selection histories

(2018) Mari Suontama et al.   HEREDITY

Genomic relationships reveal significant dominance effects for growth in hybrid Eucalyptus

(2018) Biyue Tan et al.   PLANT SCIENCE

Accuracy of Genomic Prediction for Foliar Terpene Traits in Eucalyptus polybractea

(2018) David Kainer et al.   G3-Genes Genomes Genetics

Are tree breeders properly predicting genetic gain? A case study involving Corymbia species

(2018) Evandro Vagner Tambarussi et al.   EUPHYTICA

Growth, Photosynthesis, and Cold Tolerance of Eucalyptus benthamii Planted in the Piedmont of North Carolina

(2018) John R Butnor et al.   FOREST SCIENCE

Genomic selection prediction models comparing sequence capture and SNP array genotyping methods

(2018) Bráulio Fabiano Xavier de Moraes et al.   MOLECULAR BREEDING

Accuracy of genomic selection for growth and wood quality traits in two control-pollinated progeny trials using exome capture as the genotyping platform in Norway spruce

(2018) Zhi-Qiang Chen et al.   BMC GENOMICS

Quantitative Genetics and Genomics Converge to Accelerate Forest Tree Breeding

(2018) Dario Grattapaglia et al.   Frontiers in Plant Science

Assessing the expected response to genomic selection of individuals and families in Eucalyptus breeding with an additive-dominant model

(2017) R T Resende et al.   HEREDITY

Single-Step BLUP with Varying Genotyping Effort in Open-Pollinated Picea glauca

(2017) Blaise Ratcliffe et al.   G3-Genes Genomes Genetics

Exploration of genetic architecture through sib-ship reconstruction in advanced breeding population of Eucalyptus nitens

(2017) Jaroslav Klápště et al.   PLoS One

Estimation of genomic prediction accuracy from reference populations with varying degrees of relationship

(2017) S. Hong Lee et al.   PLoS One

Genomic selection in maritime pine

(2016) Fikret Isik et al.   PLANT SCIENCE

Predição de ganhos genéticos em progênies de Eucalyptus benthamii Maiden & Cambage por diferentes métodos de seleção

(2016) Rodolfo Manoel Lemes da Costa et al.   Scientia Forestalis

Predição de ganhos genéticos em progênies de Eucalyptus benthamii Maiden & Cambage por diferentes métodos de seleção

(2016) Rodolfo Manoel Lemes da Costa et al.   Scientia Forestalis

Estimation of inbreeding using pedigree, 50k SNP chip genotypes and full sequence data in three cattle breeds

(2015) Qianqian Zhang et al.   BMC GENETICS

A comparison of genomic selection models across time in interior spruce (Picea engelmannii × glauca) using unordered SNP imputation methods

(2015) B Ratcliffe et al.   HEREDITY

Genome-wide patterns of recombination, linkage disequilibrium and nucleotide diversity from pooled resequencing and single nucleotide polymorphism genotyping unlock the evolutionary history ofEucalyptus grandis

(2015) Orzenil B. Silva-Junior et al.   NEW PHYTOLOGIST

A flexible multi-species genome-wide 60K SNP chip developed from pooled resequencing of 240Eucalyptustree genomes across 12 species

(2015) Orzenil B. Silva-Junior et al.   NEW PHYTOLOGIST

ASSESSMENT OF THE MOST ADEQUATE PRE-TREATMENTS AND WOODY BIOMASS SOURCES INTENDED FOR DIRECT CO-FIRING IN THE U.S.

(2014) Adrian Pirraglia et al.   BioResources

Genomic selection accuracies within and between environments and small breeding groups in white spruce

(2014) Jean Beaulieu et al.   BMC GENOMICS

Unraveling Additive from Nonadditive Effects Using Genomic Relationship Matrices

(2014) Patricio R. Muñoz et al.   GENETICS

Genome-Wide Regression and Prediction with the BGLR Statistical Package

(2014) P. Perez et al.   GENETICS

Accuracy of genomic selection models in a large population of open-pollinated families in white spruce

(2014) J Beaulieu et al.   HEREDITY

The significance of single nucleotide polymorphisms (SNPs) in Eucalyptus globulus breeding programs

(2013) Saravanan Thavamanikumar et al.   AUSTRALIAN FORESTRY

Model comparison on genomic predictions using high-density markers for different groups of bulls in the Nordic Holstein population

(2013) H. Gao et al.   JOURNAL OF DAIRY SCIENCE

NeEstimatorv2: re-implementation of software for the estimation of contemporary effective population size (Ne) from genetic data

(2013) C. Do et al.   Molecular Ecology Resources

Genetic variation of wood chemical traits and association with underlying genes in Eucalyptus urophylla

(2013) M. Denis et al.   Tree Genetics & Genomes

Back to Basics for Bayesian Model Building in Genomic Selection

(2012) Hanni P. Kärkkäinen et al.   GENETICS

Accuracy of Genomic Selection Methods in a Standard Data Set of Loblolly Pine (Pinus taeda L.)

(2012) M. F. R. Resende et al.   GENETICS

Genomic selection for growth and wood quality in Eucalyptus: capturing the missing heritability and accelerating breeding for complex traits in forest trees

(2012) Marcos D. V. Resende et al.   NEW PHYTOLOGIST

Extension of the bayesian alphabet for genomic selection

(2011) David Habier et al.   BMC BIOINFORMATICS

Long-term impacts of genome-enabled selection

(2011) Nanye Long et al.   JOURNAL OF APPLIED GENETICS

Nucleotide diversity and linkage disequilibrium in Populus nigra cinnamyl alcohol dehydrogenase (CAD4) gene

(2011) Fabio Marroni et al.   Tree Genetics & Genomes

Ridge Regression and Other Kernels for Genomic Selection with R Package rrBLUP

(2011) Jeffrey B. Endelman   Plant Genome

The Impact of Genetic Architecture on Genome-Wide Evaluation Methods

(2010) H. D. Daetwyler et al.   GENETICS

Genomic selection in forest tree breeding

(2010) Dario Grattapaglia et al.   Tree Genetics & Genomes

Linkage disequilibrium estimates of contemporaryNeusing highly variable genetic markers: a largely untapped resource for applied conservation and evolution

(2009) Robin S. Waples et al.   Evolutionary Applications

Predicting Quantitative Traits With Regression Models for Dense Molecular Markers and Pedigree

(2009) G. de los Campos et al.   GENETICS

Reproducing Kernel Hilbert Spaces Regression Methods for Genomic Assisted Prediction of Quantitative Traits

(2008) D. Gianola et al.   GENETICS

Efficient Methods to Compute Genomic Predictions

(2008) P.M. VanRaden   JOURNAL OF DAIRY SCIENCE

The Bayesian Lasso

(2008) Trevor Park et al.   JOURNAL OF THE AMERICAN STATISTICAL ASSOCIATION

ldne: a program for estimating effective population size from data on linkage disequilibrium

(2008) ROBIN S. WAPLES et al.   Molecular Ecology Resources

Eucalyptusapplied genomics: from gene sequences to breeding tools

(2008) Dario Grattapaglia et al.   NEW PHYTOLOGIST